Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g44 ATGGGTGAAAAATTTTGGTTGAATGAAGAGGAAAAGGCTATGGTGGAGTCAGTATTGGGTGCAGAAGGGTGGGAGTTTTTGATCTCGTGCGCTTCTGATAAAACCCATTTGTCAGAATCGGGTGTCGCATCCAGTGATGGTGGTGTCCAGAAGGGGCTTCGTCAGCTTGTTGAAGGGTCTAATTGGAGTTACGCCATATTCTGGCGTGTTTCGAGGGTGAAGGATGTGTTGATTTGGGGTGATGGATATTGTAGAGAGGCAAAAGGGGAGGTTGGTGATGGTGGTTTGGAGGAAGTGGGGAAGAAGAAGGAGGTGCTGAAGAAGCTTCATGAGTATTTTGGGGTTGGGGAGGAGGATAAATACTGGGCTAAATTGGATTTGTTGTCAAACATCGAGATGTTTTATCTTACTTCGATGTTTTATTCGTTTTCGGGTGATTTGCAGTATGGCCCTGCTCTGGTGCTTAAGTCTGGGAGATGGGTTTGGGTTGTTGATGCAGTTGGTTGTTCAGATCAGTATCGGGCAAGGTCGGTTTTGGCAAGATTGGCAGGGTTTCAGACAGTTGTGTTTGTGCCAGTGAAGGATGGGGTGATTGAGGTTGCTTCTTTAATGTTGGTTAAGGAGGATGAGAATGTTGTGAAGATGATTAAGGGTGTATTTGGGGGGATGAATTTTGGGCAGGCGAAGGTGTATCCAAAAATATTTGGGCATGAACTTAGTCTTGGTAGTGGGGCAAAGTCACGGTCAATGAGTATTAATTTTGCCCCCAAGTTGGAAGGGGATTCAGGGTTTGGTGCAGAATCATATGATGTCCAAGGCTTGGGTTCAAATCAGCAGCCTAAGGATGACTTGTTGCCTAGGGTTGATGAACGAAAACCTAGGAAGAGAGGAAGGAAGCCAGCTAATGGGAGAGAAGAGCCATTGAATCACGTGGAAGCTGAGAGGCAGAGGAGGGAGAAGCTTAACCAAAGGTTCTATGCATTAAGAGCTGTTGTTCCTAATATATCCAAGATGGATAAGGCCTCGTTGCTTGGTGATGCCATTTCATACATTACTGATCTCCAGATGAAGATTCGGATATTGGAAGCTGAGAAGGAGATTGTAAACAATAAGCAAAACCAATCACCTGTGCCACAGATCGACTTTCAGGATAGGCAGGAGGACACAGTTGTAAGAGTTAGCTGTCCCTTGGATGCTCATCCTGTTTCTAGAGTCATAAAGACGCTTAAGGAACACCAAGTTGTAGCTCCAGAGGCTGAAGTTTCCACTATGGAAAATGATAAGGTCCTTCACACGTTCTCCATTCGGACTCAAACTGGTGCTGCCGAGTGCTTGAAGGAGAAGCTGAAAAACATGGAAACACATCGTTGCTGGCGAATTGGTGTTTGGTATTTGATATTTAATGAGTTCTATATGACTTCAGACTGCTCATTCAAACTTCTTCAGCCAATTTTGTGA 1458 44.86 MGEKFWLNEEEKAMVESVLGAEGWEFLISCASDKTHLSESGVASSDGGVQKGLRQLVEGSNWSYAIFWRVSRVKDVLIWGDGYCREAKGEVGDGGLEEVGKKKEVLKKLHEYFGVGEEDKYWAKLDLLSNIEMFYLTSMFYSFSGDLQYGPALVLKSGRWVWVVDAVGCSDQYRARSVLARLAGFQTVVFVPVKDGVIEVASLMLVKEDENVVKMIKGVFGGMNFGQAKVYPKIFGHELSLGSGAKSRSMSINFAPKLEGDSGFGAESYDVQGLGSNQQPKDDLLPRVDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYITDLQMKIRILEAEKEIVNNKQNQSPVPQIDFQDRQEDTVVRVSCPLDAHPVSRVIKTLKEHQVVAPEAEVSTMENDKVLHTFSIRTQTGAAECLKEKLKNMETHRCWRIGVWYLIFNEFYMTSDCSFKLLQPIL* 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 686588 688584 + Vvi7g44 Vvi7g44 788910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g44 485 CDD bHLH_AtAIB_like 302 375 - -
Vvi7g44 485 MobiDBLite consensus disorder prediction 283 316 - -
Vvi7g44 485 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 220 IPR025610 -
Vvi7g44 485 PANTHER MYC 278 451 IPR045084 GO:0003700|GO:0006355
Vvi7g44 485 PANTHER MYC 1 278 IPR045084 GO:0003700|GO:0006355
Vvi7g44 485 MobiDBLite consensus disorder prediction 269 316 - -
Vvi7g44 485 SMART finulus 311 360 IPR011598 GO:0046983
Vvi7g44 485 Coils Coil 351 371 - -
Vvi7g44 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Vvi7g44 485 Gene3D - 298 372 IPR036638 GO:0046983
Vvi7g44 485 Pfam Helix-loop-helix DNA-binding domain 309 355 IPR011598 GO:0046983
Vvi7g44 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 377 IPR036638 GO:0046983
Vvi7g44 485 PANTHER TRANSCRIPTION FACTOR BHLH3 278 451 - -
Vvi7g44 485 PANTHER TRANSCRIPTION FACTOR BHLH3 1 278 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15036 PF14215 bHLH-MYC_N 1.40E-38 CL0161 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g44 - - vvi:100254474 851.277