Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g457 ATGGACGATAGCTGTGCCGTTTGCGCCGAGACTCTCGAATGGGTTTCGTACGGACCATGTGGCCATCGCGATGTGTGCTCGACTTGCGTGGCTCGTCTTCGCTTCATCTGCGACGATCGCCGTTGCTGCATCTGCAAAACCGAGTGCAACGTTGTCTTTGTCACGAAGGCCTTAGGAGATTATACAAGAATGGTTAATGATTTTTCAATCCTGCCAACCGAATCAAGGGAGGGTCAAGTGGGAATGTATTGGTATCATGAGGACACACAAGCATTTTTTGATGATGTGGACCACTACAAGATGATCAAGGCAATGTGCAGGCTTTCTTGCAGCGTATGTGACCAGATGGAGGAGCAATCAAATGATGGCTCAAAGAGAAGGCAAAAGTTTAGGAATATTGACCAGTTGAAGGGTCATTTATTCCATCGGCATAAATTGTTCATGTGCAGTTTGTGTTTGGAAGGAAGAAAAGTATTTATTTGTGAACAAAAGCTCTACAATAGAGCACAGTTGAATCAGCATATAAACACAGGTGACTCTGAGGTGGATGGAAATGAGGCTGAAAGAGGTGGCTTCATGGGGCATCCGATGTGTGACTTCTGTAGAAGCCCATTTTATGGAGATAATGAGCTGTACTCGCATATGTCCACGGAACATTATACCTGTCATATATGCCAAAGGCAGAACCCTGGACAATTTGAATACTATAAAAATTATGATGACCTAGAGATCCATTTCCGGAGAGACCATTTCTTATGTGAGGACGAAGCCTGCCTTGCAAAAAAGTTTGTCGTCTTTCAATCTGAAGCAGAAATGAAGAGGCATAATGCTATAGAACATGGAGGACGTATGTCTCGCTCTAAACGTAATGCTGCTCTTCAGATACCAACAAGTTTTCGCTATCGAAGAAGTACTGAACAAGATCAACGCCGTGGAAGAGGAAGGACATTTAATCGTGATTCCTCTGCTGATCAACTCTCCTTGGCCATTCAAGCTAGTTTGGAGACAGCTAATGCAAATGACACATATCATGATCCACCCCCATCATCATCATCCAGCACTCAGGCAGTTTCTGATCATTATGATAGCGATCCCATAATTCAGCCATTTGAATCGTTGGCTATGACAGATTCTGAATCTTCTTCGAGATATCGTCAAGCCTTGGGTCATAACCCAATGAATGTACCTCTTGTGGAGTCTTTCTTTCCTCCTCTCGCCACGGCACCCAGCAGCAGTAAGGCAAATGTTCTCCATTCAGGTCAGGGTTGGCCAGCCCCAAATCGTGGATCAGTCCCACTATCAAGTAGTTCAACTCAATCTAAGGTTGCAAATATTGCACCTGTGCCATCATCTAGTCTGGATCAGGTTAAGTCAGCAACTGGTAGTGGATCTGCTCCAAACAGCTATGCTAGTTTTGCTCAGGCTCGACCCACAACAGTGCATGGATTTGCATCATCTGGTTCTTCAAGTAACTCAGGCAGCATAAGTAGGATCAGCCACTCTGCATCAGCCCCAAATCTTGCTGATAGCAGATCTTTTGATCCTTCTATGTCTGATTTTCCTCCAGTTTCTGCGACACAAAAGCAAAAGTTGCCAACAATTACCCAGCCCGTGCTGAATGCAGAAGCTGTTCACACTGCAAACAAGTCTCTGGTGGAAAAGATCCGTGCTGCTCTTGAATTTGATGAAGACAAATACACCGCTTTTAAAGACATATCCGGGCAGTATCGGCAAGGTTCAATTGACACCGCAGTATATCTGGCTTATGTTCAGCAGTTTGGTTTGTCACATCTTGTTCTTGAATTGGCTAGACTCTGTCCTGATGCTCAGAAGCAGAAAGAACTTTTAGAGACCTATAATGCTAGTGTACGGAGCAGTGGTAAAGGAAAACCTGTAGTTGTGGAGGACAGTAATGTGAAGGATACATTAGCAGATAACATCATTAACACAGTTAGGAACCTTCGGTCCACCTTCAAGCCTTCAGAAGAAGAGGTGGAGGTGTTGTCAAAGGATGGGTACCGTGGTGCAAAAGGCAAATCAAAGGGAGTGCCATCAGCGGGTGGTGGATCTAATCAAAATTTAGGGGCTGTGAGTGGAGGAAGTCAGCGACGAAAGAAAGCATCAAAATTCCTCAGAGCCCGTCTGGGTGATGGTTCAGTGGGTGCACTTCTGAACTCCCAAGATCCTGACCCAGATCCAGATCCAGTGGAGGAAACATTAGATGCAAACATGAATCCGGCTGAAGGCTTACCAGTTCATGGTGTTTGGCGGAATGGTGGTGGTATTGTTGAAATGAATGGACAACTTCAATGGTTGTCTACCTCTCATGAACCCTTCTTTTAA 2343 44.94 MDDSCAVCAETLEWVSYGPCGHRDVCSTCVARLRFICDDRRCCICKTECNVVFVTKALGDYTRMVNDFSILPTESREGQVGMYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDQMEEQSNDGSKRRQKFRNIDQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHINTGDSEVDGNEAERGGFMGHPMCDFCRSPFYGDNELYSHMSTEHYTCHICQRQNPGQFEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRRSTEQDQRRGRGRTFNRDSSADQLSLAIQASLETANANDTYHDPPPSSSSSTQAVSDHYDSDPIIQPFESLAMTDSESSSRYRQALGHNPMNVPLVESFFPPLATAPSSSKANVLHSGQGWPAPNRGSVPLSSSSTQSKVANIAPVPSSSLDQVKSATGSGSAPNSYASFAQARPTTVHGFASSGSSSNSGSISRISHSASAPNLADSRSFDPSMSDFPPVSATQKQKLPTITQPVLNAEAVHTANKSLVEKIRAALEFDEDKYTAFKDISGQYRQGSIDTAVYLAYVQQFGLSHLVLELARLCPDAQKQKELLETYNASVRSSGKGKPVVVEDSNVKDTLADNIINTVRNLRSTFKPSEEEVEVLSKDGYRGAKGKSKGVPSAGGGSNQNLGAVSGGSQRRKKASKFLRARLGDGSVGALLNSQDPDPDPDPVEETLDANMNPAEGLPVHGVWRNGGGIVEMNGQLQWLSTSHEPFF* 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4578716 4584812 + Vvi7g457 Vvi7g457 789323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g457 780 MobiDBLite consensus disorder prediction 428 529 - -
Vvi7g457 780 MobiDBLite consensus disorder prediction 660 706 - -
Vvi7g457 780 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Vvi7g457 780 MobiDBLite consensus disorder prediction 339 361 - -
Vvi7g457 780 MobiDBLite consensus disorder prediction 303 318 - -
Vvi7g457 780 CDD RING-HC_ZNF598 5 46 IPR041888 -
Vvi7g457 780 MobiDBLite consensus disorder prediction 685 699 - -
Vvi7g457 780 MobiDBLite consensus disorder prediction 303 322 - -
Vvi7g457 780 SMART c2h2final6 220 250 IPR013087 -
Vvi7g457 780 SMART c2h2final6 196 219 IPR013087 -
Vvi7g457 780 SMART c2h2final6 251 280 IPR013087 -
Vvi7g457 780 SMART c2h2final6 108 144 IPR013087 -
Vvi7g457 780 MobiDBLite consensus disorder prediction 339 363 - -
Vvi7g457 780 MobiDBLite consensus disorder prediction 409 529 - -
Vvi7g457 780 PANTHER EBR1 1 761 - -
Vvi7g457 780 MobiDBLite consensus disorder prediction 718 742 - -
Vvi7g457 780 PANTHER ZINC FINGER PROTEIN 598 1 761 IPR044288 GO:0061630|GO:0072344
Vvi7g457 780 MobiDBLite consensus disorder prediction 660 677 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g457 K22381 - vvi:100262296 1465.29