Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g464 ATGGAGGCTAAAATTGGGGGTGAAGCTCACCATTTCTATGGTATCGGGACTTCTGATTTGCGTGTGGTGGGGAAGAGGAGTTCGGAATGGGATTCGAATGAGTGGAAATGGGATGGTGATCTTTTCATAGCCAGTCCCATGAATCCAGTGCCCTCAGATTACACGAGCCAGCAATTTTTCCCACATGGCTCGGCAATTCCAAAAAGGAAAAGGGAATTGGAGAAACGTAGGAGGGTTATCGTTGTCCAAGACGACAATGATGAAACTGGGACTCTTTCTCTAAAGCTTGGTGGGCATGGACATTCGGTTTCTGAAAGGGAGGTGGGAAATTGGGAAGGGACAAGTGGGAAGAAGACCAAATTGGCTGGAGTTAGTTCCAGTCGCGCTGTTTGTCAGGTAGAGGACTGTGGGGCTGATCTAAGCAAAGCCAAGGATTATCACAGACGACATAAGGTCTGTGAGATGCATTCAAAGGCCGGTTGCGCCCTGGTGGGAAATGATATGCAACGATTCTGTCAGCAGTGTAGTAGGTTTCATGTCCTTCAAGAGTTTGATGAGGGGAAAAGGAGTTGTCGGAGACGTTTAGCTGGCCATAATAAACGGAGGAGGAAGACACATCCAGATGCTGCCGGTAATGGAAATTCCTTGAATGATGATCAGGCTAGTGGTTATCTCTTGATAAGTTTACTGAGGATACTTTCCAACATGCATTCCAATGATAAATCAGATCAGACTAAGGATCAGGATCTGCTGTCCCATCTTTTAAGAAGCCTTGCCAGCTATGGTGGTACAAATGGGAGTAGAAACATATCAGGGCTCCTTCAGGAATCTCAACTGCTGAATGATGGGATTTCTGTTGGAAATACAGAAGTGGTTTCGGCTCTGCTCCCAAATGGGGTACATGCAGATGAAGCTAGGGTTGGAAATATGCAAATGACTTCTTGGCAGATCAAGTTGAATAATTTTGATTTGAATGACATATATATTGATTCAGATGATGGCATGGAAGATCTGGAGAGATCGCCTGTCCCTGAGAATCTGGGGACTGGTTCTCTTGAATGTCCCTCATGGGTACAACAAGACTCTCATCAATCAAGTCCACCTCAGACAAGTGGCAATTCTGATTCAGCATCTGCCCAGTCACCTTCTAGTTCCAGTGGAGAGGCTCAGAGCCGCACCGATCGGATTGTTTTCAAACTATTTGGGAAAGAACCAAATGATTTTCCTCTTGTTCTGCGAGCACAGATTCTTGACTGGTTATCTCATAGTCCTACTGACATTGAGAGCTACATTAGGCCTGGTTGTATTGTTCTAACAATTTATCTTCGTCTACCTGAGTCCACATGGGAGGAGCTTTGCTGTGATCTGGGTTCCAGTTTGAGTAGGCTTCTGGATGTCTCAAATGATACTTTCTGGAGAACTGGATGGGTGTATATTAGAGTGCAGCATCAAATAGCATTTATCTACAACGGTCAGGTTGTTGTAGACATGTCCTTACCTCTCAAGACTAATAATTATAGCAAAATTTTAAGCATCAAACCTATTGCAATATCTATGTCTGAGGAAGCTCAATTTTTGGTTAAAGGCTTTAACCTGTCTCGGCCAGCCACAAGGTTACTCTGTGCACTAGAAGGAAAGTATCTTGTTAAGGAAGCAACTCATGAGTTAATGGATGATATTGATAGTGTGAAGGAGCATGATGAGCTCCAGTATCTCAACTTCTCTTGCTCTATTCCCAAAATGACTGGAAGAGGATTCATTGAGGTTGAAGATCACGGTCTCAGCAGCAGCTTCTTTCCCATTATAGTTGCAGAGAAGGATGTTTGTTCAGAGATCTGTATGCTTGAGAGTACGATAGAGATGACTGACATTGATGAAGATGGCTACCTTTTTTCTTTCAAACGGTTCAAGTGGCTGATGGAGTTCTCCATGGACCGTGATTGGTGTGCTGTTGTCAAGAAACTCTTAGACATCATGCTTGATGGTACTGTGGGTGCAGGAGAGTACCCTTCCTTGAAGCTTGCATTCATGGAGATGGGTCTTCTTCACAGAGCTGTACGAAGAAATTCTAGGCCTCTGGTGGAACTCCTGTTGAGATACGTCCCTGAGAGAGGAGGCCGTGCAAGCTTCTTGCTTAGGCCTGATGTGGTAGGACCTGCTGGTTTGACACCTCTCCACATTGCAGCTGGTAGGGATGGTTCCGAAGATGTATTGGATGCATTGACTGATGATCCTGGAATGGTGGGAGTTGAAGCATGGAAGAGTGCTCGTGACAGCACAGGTTTCACTCCTGAAGATTATGCTCGTTTACGAGGGCACTACTCATACATCCACCTGGTCCAGAAGAAGATCAACAGAAGACTAGGAAATGGGCATGTGGTAGTTGACCAGTGCAAGCGTTGCAATCACAAGGTGGCTTATGGAAATGCCAGCAGATCTCTGTTATACAGGCCTGCAATGCTTTCAATGGTGGCCATAGCTGCAGTCTGTGTCTGTGTAGCACTTCTCTTTAAAAGCTCACCTGAAGTTCTATACGTGTTTACTCCCTTCCGGTGGGAATTGTTGGACTATGGCACAAGCTGA 2583 45.18 MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFFPHGSAIPKRKRELEKRRRVIVVQDDNDETGTLSLKLGGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSLNDDQASGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQESQLLNDGISVGNTEVVSALLPNGVHADEARVGNMQMTSWQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQVVVDMSLPLKTNNYSKILSIKPIAISMSEEAQFLVKGFNLSRPATRLLCALEGKYLVKEATHELMDDIDSVKEHDELQYLNFSCSIPKMTGRGFIEVEDHGLSSSFFPIIVAEKDVCSEICMLESTIEMTDIDEDGYLFSFKRFKWLMEFSMDRDWCAVVKKLLDIMLDGTVGAGEYPSLKLAFMEMGLLHRAVRRNSRPLVELLLRYVPERGGRASFLLRPDVVGPAGLTPLHIAAGRDGSEDVLDALTDDPGMVGVEAWKSARDSTGFTPEDYARLRGHYSYIHLVQKKINRRLGNGHVVVDQCKRCNHKVAYGNASRSLLYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFTPFRWELLDYGTS* 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4628141 4637596 - Vvi7g464 Vvi7g464 789330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g464 860 MobiDBLite consensus disorder prediction 91 116 - -
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 306 IPR044817 GO:0003677
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 311 627 IPR044817 GO:0003677
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 797 859 IPR044817 GO:0003677
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 629 796 IPR044817 GO:0003677
Vvi7g464 860 MobiDBLite consensus disorder prediction 335 391 - -
Vvi7g464 860 Pfam SBP domain 131 204 IPR004333 GO:0003677
Vvi7g464 860 MobiDBLite consensus disorder prediction 195 216 - -
Vvi7g464 860 ProSiteProfiles Zinc finger SBP-type profile. 128 205 IPR004333 GO:0003677
Vvi7g464 860 MobiDBLite consensus disorder prediction 352 391 - -
Vvi7g464 860 SUPERFAMILY SBT domain 129 210 IPR036893 GO:0003677|GO:0005634
Vvi7g464 860 SUPERFAMILY Ankyrin repeat 282 780 IPR036770 -
Vvi7g464 860 Gene3D - 653 788 IPR036770 -
Vvi7g464 860 Gene3D - 122 192 IPR036893 GO:0003677|GO:0005634
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 311 627 - -
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 797 859 - -
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 629 796 - -
Vvi7g464 860 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 16 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g464 - - - vvi:100258912 1617.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi5g179 Vvi7g464 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g464 ECH 155 861 SBP-box Gene Family AT2G47070 58.9 2.3e-242 835.5
Vvi5g250 . 149 981 SBP-box Gene Family AT2G47070 52.6 3.0e-221 765.4
Vvi11g804 . 4 158 SBP-box Gene Family AT1G27370 52.2 8.0e-40 161.8
Vvi7g464 ECH 1 861 SBP-box Gene Family AT3G60030 55.1 6.8e-268 920.6
Vvi18g24 . 1 920 SBP-box Gene Family AT1G20980 52.6 6.2e-278 954.1
Vvi11g804 . 1 158 SBP-box Gene Family AT5G43270 61.6 4.5e-49 192.6
Vvi5g384 . 8 685 SBP-box Gene Family AT5G18830 52.6 3.1e-195 679.1
Vvi7g464 ECH 155 861 SBP-box Gene Family AT2G47070 58.9 2.3e-242 835.5
Vvi5g250 . 149 981 SBP-box Gene Family AT2G47070 52.6 3.0e-221 765.4
Vvi11g804 . 1 158 SBP-box Gene Family AT5G43270 61.6 4.5e-49 192.6
Vvi5g384 . 8 685 SBP-box Gene Family AT5G18830 52.6 3.1e-195 679.1
Vvi11g804 . 4 158 SBP-box Gene Family AT1G27370 52.2 8.0e-40 161.8
Vvi7g464 ECH 1 861 SBP-box Gene Family AT3G60030 55.1 6.8e-268 920.6
Vvi18g24 . 1 920 SBP-box Gene Family AT1G20980 52.6 6.2e-278 954.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15037 PF03110 SBP 1.10E-28 No_clan Vvi TF