Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g465 ATGAGTTGCTTTGGTTGTTGTGAAGATGATGACATCCATACAGCTCCTGAGAGTGGAAATCCATTCGCTGCAAAAAACCCAGCAGGAAATGATGGAGGTTATCGTCACACAGACCCTGCACCAAAGGGAACTCAAGCAGTTAAAGTCCAGCCTATTGCAGTCCCTCCCATTCCATTCGATGAACTGAAGGAAATTACAGATAACTTTGGAACAAGTGCTCTGATCGGAGAGGGCTCATATGGAAGAGTGTATTATGGGCTTCTGAAAAATGGGCAGGCTGCAGCAATCAAAAAATTAGATGCCAGCAAACAACCTGACGAGGAATTCTTAGCCCAGGTATCCATGGTATCAAGGCTGAAACATGACAATTTTGTTGAATTGATTGGTTATTGTGTTGATGGAGGTTCTCGTATTCTCGCCTATGAGTTTGCATCTAATGGATCTCTTCATGACATTCTTCATGGGAGGAAGGGAGTTAAAGGAGCACAACCTGGGCCCATTCTGTCATGGGCACAACGGGTAAAAATTGCAGTAGGAGCTGCAAGAGGGCTTGACTATCTGCATGAGAAGGCATCACCTCACATCATCCATCGTGACATTAAGTCCAGCAATGTGCTACTCTTTGATGATGATGTTGCTAAAATTGCTGATTTTGATTTGTCAAATCAAGCTCCAGATATGGCAGCACGACTTCATTCCACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCTGAATATGCAATGACTGGACAGCTGAATGCAAAAAGTGATGTATATAGCTTTGGTGTTGTGCTGCTTGAGCTTCTGACAGGACGTAAACCTGTTGATCATACGTTACCTCGTGGGCAGCAGAGTTTAGTAACATGGGCTACACCAAAACTAAGTGAAGACAAGGTTAGGCAGTGTGTTGATACAAGACTAGGACAAGACTACCCTCCCAAGGCAGTTGCCAAGATGGCTGCTGTTGCTGCCTTGTGCGTGCAATACGAAGCTGATTTCCGGCCAAACATGAGCATTGTTGTTAAAGCTCTCCAGCCTCTATTAAATGCCCGGCCTGGACCTTCCGGTGAAGTACCAAACATGTGA 1089 45.09 MSCFGCCEDDDIHTAPESGNPFAAKNPAGNDGGYRHTDPAPKGTQAVKVQPIAVPPIPFDELKEITDNFGTSALIGEGSYGRVYYGLLKNGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHDNFVELIGYCVDGGSRILAYEFASNGSLHDILHGRKGVKGAQPGPILSWAQRVKIAVGAARGLDYLHEKASPHIIHRDIKSSNVLLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGQDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGPSGEVPNM* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4648734 4654333 + Vvi7g465 Vvi7g465 789331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g465 362 PIRSF TyrPK_CSF1-R 40 163 - -
Vvi7g465 362 PIRSF TyrPK_CSF1-R 159 278 - -
Vvi7g465 362 PIRSF TyrPK_CSF1-R 311 353 - -
Vvi7g465 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g465 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
Vvi7g465 362 CDD STKc_IRAK 75 348 - -
Vvi7g465 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Vvi7g465 362 SUPERFAMILY Protein kinase-like (PK-like) 47 345 IPR011009 -
Vvi7g465 362 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g465 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vvi7g465 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Vvi7g465 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 357 - -
Vvi7g465 362 Gene3D Phosphorylase Kinase; domain 1 36 143 - -
Vvi7g465 362 MobiDBLite consensus disorder prediction 15 42 - -
Vvi7g465 362 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76753 PF07714 PK_Tyr_Ser-Thr 8.40E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g465 K13436 - vvi:100265884 724.161