Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g468 ATGGGAGGGGATGGAAACGGTGGCACAGCGGCGCGTGCGACGCTCCCGGCCGAGCCGCAGTACGTGTCGGTAAAGACGTCGGTGTGGTGGGACATCGAGAACTGCCAGGTCCCCAAGGGCTGCGATCCACACGCCATCGCTCAGAACATCAGTTCCGCGCTGGCCAAGTTGTACTACAGTGGTCCAGTCTCCATCTCAGCCTATGGAGATACAAATCGCATCCCGGCTTCTGTGCAGCAGGCGCTCTCCAGCACCGGCATCGCTCTCAATCACGTCCCCGCCGGTGTGAAAGATGCAAGTGACAAGAAGATTTTAGTTGATATGCTGTTCTGGGCGGTGGATAATCCTGCCCCAGCTAATTATTTGCTGATTTCTGGTGATAGAGATTTTTCTAATGCTCTCCATCAGTTGCGAATGAGAAGATATAACATACTTCTAGCACAACCACAAAAAGCATCTGCTCCGCTAATTGCTGCAGCAAAGAGTGTATGGTTATGGACAAGCCTTGTTGCTGGAGGATTCCCACTAACAAGTGGTGAATCATCACAACTTGCTGATTGTAACAATGTGTTCAACCCTGAAATGTCTCAGTATCCAGAACTCAGAAGTTTTTTTCTGCGGGGAGGGTTGTGTGCTAGGATCAATGGCAATAACTTCATTGGAAATCCACAAGATCACTATCCTCATCCTTTGAGGCCAAACAACATCCCTACGCAAGCTAGTTTTGCTTCAAATAATCTGTATCCACCAAATTCTTATAGCCATGGTTTTCGACCAATGCCTCCCAGATCTGAAGGTCCGAGATTTCCCTCGGCTCCACCTGCAAATGTGCCTGATATTAGCCGGCTAAGTATGTCTGAATACCCCAACTATGCTCAAAATCCTCCTAATTTTCATCAACGCATTGGAGGAGAGTACAAACCATACTCTAGCGAGTCTCCACACCCACCAGGTTTAAATGTACCACAGAAAGGCTATCTCCCACACACAAGTCAGCTGCTCTACCAGGATACTTCAAGCAATAGGTATCCTGGTGGATGTCCACAACCATCTGAATATGTGCAAGGTCTTATAGGGGTTATTCTACTTACTTTAAACACCTTAAAAACTGAAAAGATTATGCCTACTGAAGTGAATATAAGCGATTGCATTCGTCATGGAGATCCAAAACATCAAAATACTGATGTGAGAAAGGCCCTGGAAAGTGCTGTTGAGCAGCAAATGGTAGTGAAGCAAAATTTAGGTGCAGTACAGTTGTATGTTGGTAAAAAAGAGAGATTATGGAAGTGTGTGAACCCTATAGGTGGTAATCCTAATCAATATCCAAAAGCAACATGGGATAGAATTCAAATGTTTTTAGCTACCTCTATAGGACGATCAGCAATAATGGCTTCTCAATGCAAGTATGAGGCAGCATTGATTCTTAGAAACAAGTGCTTAGAAGAGTTTGCTTTGGGTGATGTGCTCCAGATCTTGAATATGCTAAGCACAATGAAGAAATGGATTGTAAATCATCAGTCAGGATGGCAACCAATTAAAATTACTCTTGCAGAGACAAATACTGATATAAATACTGAAACTTCTGCTTGA 1590 44.59 MGGDGNGGTAARATLPAEPQYVSVKTSVWWDIENCQVPKGCDPHAIAQNISSALAKLYYSGPVSISAYGDTNRIPASVQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLIAAAKSVWLWTSLVAGGFPLTSGESSQLADCNNVFNPEMSQYPELRSFFLRGGLCARINGNNFIGNPQDHYPHPLRPNNIPTQASFASNNLYPPNSYSHGFRPMPPRSEGPRFPSAPPANVPDISRLSMSEYPNYAQNPPNFHQRIGGEYKPYSSESPHPPGLNVPQKGYLPHTSQLLYQDTSSNRYPGGCPQPSEYVQGLIGVILLTLNTLKTEKIMPTEVNISDCIRHGDPKHQNTDVRKALESAVEQQMVVKQNLGAVQLYVGKKERLWKCVNPIGGNPNQYPKATWDRIQMFLATSIGRSAIMASQCKYEAALILRNKCLEEFALGDVLQILNMLSTMKKWIVNHQSGWQPIKITLAETNTDINTETSA* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4670370 4674928 + Vvi7g468 Vvi7g468 789334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g468 529 Pfam OST-HTH Associated domain 466 521 IPR025677 -
Vvi7g468 529 Pfam NYN domain 25 161 IPR021139 GO:0004540
Vvi7g468 529 PANTHER LIMKAIN B LKAP 220 346 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi7g468 529 PANTHER LIMKAIN B LKAP 346 514 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi7g468 529 PANTHER LIMKAIN B LKAP 17 199 IPR024768 GO:0005777|GO:0010468|GO:1903231
Vvi7g468 529 CDD PIN_limkain_b1_N_like 25 149 - -
Vvi7g468 529 Gene3D - 22 168 - -
Vvi7g468 529 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 220 346 - -
Vvi7g468 529 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 346 514 - -
Vvi7g468 529 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 17 199 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g468 Vvi14g34 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g468 - - vvi:100253767 648.277