Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g469 ATGGATAGGCTCTGTGTATTTAGCAGCATTGTTCTCTTTCTGGGGGTGCTCACAGGGACAACACTTAGAGGAGCATCAGCTGCTTGGCTCCAAGCCCATGCAACCTTTTATGGTGGAAGTGATGCTTCAGGAACTATGGGTGGTGCATGTGGTTATGGCAATCTTTACAGCGATGGTTATGGAGTAAAGACTGCAGCGCTGAGCACGGCTTTGTTCAACAATGGCAAGGCATGTGGTGGCTGCTATCAGATTGTGTGTGACGCAACCAAGGTGCCCCAGTGGTGCCTCAAGGGCACATCTATTACCATCACCGCTACCAACTTCTGCCCACCGAATTACGCTCTCCCTAGTGATAATGGCGGGTGGTGCAATCCTCCAAGGCCTCACTTTGACATGTCTCAACCTGCTTTCGAGTCTATAGCAAAATACAGGGCTGGAATTGTACCAATTCTTTATAGGCAAGTTCGATGCAAGAGAAGCGGAGGCATGAGGTTCACCATAAATGGAAGGGATTACTTCGAGCTAGTTCTGATATCCAATGTGGGAGGTGCTGGAGAAGTCTCTAAGGTATGGATAAAAGGGTCCAAAGCCAATAGCTGGGAAGCCATGACCAGGAACTGGGGCTCAAACTGGCAGAGCCTGAAATACCTGAACGGCCAGAGCTTGTCCTTTAGAGTCCAAAGCAGTGACGGGAAGACCCTCACAGCCCTCAATGTGGCACCTTCAAACTGGAAGTTTGGCCAGTCATTCACCACAAATGTTCAATTCTGA 771 49.29 MDRLCVFSSIVLFLGVLTGTTLRGASAAWLQAHATFYGGSDASGTMGGACGYGNLYSDGYGVKTAALSTALFNNGKACGGCYQIVCDATKVPQWCLKGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFESIAKYRAGIVPILYRQVRCKRSGGMRFTINGRDYFELVLISNVGGAGEVSKVWIKGSKANSWEAMTRNWGSNWQSLKYLNGQSLSFRVQSSDGKTLTALNVAPSNWKFGQSFTTNVQF* 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4682949 4684167 + Vvi7g469 Vvi7g469 789335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g469 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Vvi7g469 256 Pfam Lytic transglycolase 64 152 IPR009009 -
Vvi7g469 256 Gene3D - 163 256 IPR036749 -
Vvi7g469 256 SUPERFAMILY Barwin-like endoglucanases 22 180 IPR036908 -
Vvi7g469 256 PANTHER EXPANSIN-A15 9 256 IPR002963 GO:0009664
Vvi7g469 256 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Vvi7g469 256 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vvi7g469 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vvi7g469 256 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vvi7g469 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vvi7g469 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Vvi7g469 256 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vvi7g469 256 PANTHER EXPANSIN 9 256 - -
Vvi7g469 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Vvi7g469 256 Gene3D - 19 158 IPR036908 -
Vvi7g469 256 SMART dpbb_1 64 152 IPR007112 -
Vvi7g469 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Vvi7g469 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vvi7g469 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g469 - - vvi:100248670 532.332