Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g486 ATGAGTTTCAATTCTAATATTTGGGAGGAAAGGCTTTGTCAGTGGAAGCTGGCAAGGGAGAGACTGCTACGAAGAACTGGAAGCCAAGAAGAGATACCTGATCCATCTGACCTTGGTTCGGTAGATGAGATGGAACTTCGACAGCCAGAAATGGATAACGAAAGTCGGCAATTTCTTTCAAGAAAAGTTCCCATACCTCCCTCAATGATCTACCCCTATAGGGTCTCAGTGATCTTCCGGCTTGTTATTTTAGCTTTTTTCCTCCGATATCGATTGACCCATCCTGTACATAATGCATATGGGCTTTGGTTAGCTTCAGTGTTCTGTGAAGTTTGGTTTTCCGTATCTTGGATTCTAGATCAGCTTCCCAAGTGGCAACCAGTAAACAGGCAAACATTCCCTGAACGCCTTTGCATGAGGTACAACCAACCTGGAAAACCAAGTGGACTAGCTTCTGTTGATGTCTTTGTCAGTACTGCTGACCCTCTGAAAGAATCACCTATTGTCATATCAAACACTATCCTTTCTATACTTTCTGTAGACTATCCAGCTGAAAAAGTTTCATGCTATGTTTCTGATGAGGGGGCAGCTCGATTAACTCTGGAAACTCTATCGCTAACCTGTGATTTTGCAAGAAAATGGGTGCCCTTTTGCAAGAAATTCCAAATTGAGCCTCCATCTCCTGAGAGTTATTTCTCACAAAAGGTTGACCATTTGAAATACAACCCATATCCGACATTTTCTAAGGAGAGAAGGTTAATGAAGAGGCGATATGAAGATTTTAAAGCCCAAATTAATGGTCTGATAACCAAGTTCCAAGATGTACCTTCTGAGGGTTGGACAATGAAGGATGGCACTCCATGGCCTGGAAATGACATAAAAAATCATCTGGGCATGATGCAGATAATAATGGGTCGCGGTGGGCCTCATGGCAGTGATACTAGAGCTTTGCCACAAGTAGTTTATGTGTCTCGGGAAAAACGCCCTGGTTTCCATCACAACAATAAGGCGGGTGCCATGAATGCCCTGGTCCGAGTGTCAGCTCTTCTTACAAATGGGACCTACATTTTGAATCTGGATTCTGATCACTATATAAACAACAGCAGAACTTTCCTTGAAGCAATGTGCTTTTTGATGGATCCCAGTAACCAGAAGATATGCTTTGTTCAATTTCCTCAGAGATTCGAGGGTGTTGATGCAAATGATCGGTATGGGAGCCACAACACAATCTTCTATGATATCAACTTGAAGGGTTTCGATGGAATACAAGGGCCTTTTTATCTTGGCACAGGTTGCTTCTTGTACCGGAAAGCTTTATGTGGTTATGACCCATCTTTTGAGCAAAAGATTCTCAACACAAGATGGTTGGATCTTAGAATGAAGAGGCCAAGTGACAACCATGGCCATTATTTTTCTGATGCTTCTGATGAAAGCAGCTCGAGTTTACTCGTTCAGGAACTGAACAGTCTTGAAAGGGAATTTCCATCTAGTTTCCAAAGCATGGAGATGTGTTTTGGCCAGGCTCCACTTCTTATTGCATCAAATTTTGTTGATGATGACATATTTTCTTCGTATGCCACAATTGAAGAAATTCTAAGAGCAGCAATTCATGTAATCAGTTGTGATTATGAAGACAAGACTGCTTGGGGGATAGAGGTTGGCTGGATATATGGCTCTCAGACTGGGGATGTTCTGACTGGTCTGAAGATGCATGCTAGAGGATGGAGATCTGTATATTGTATGCCAGTTCGTGCCGCCTTTAGAGGATCAGCACCTATTAATCTTTCAGATCGTCTAACCCAGGTGCTTTTTTGGGCCACTAGCTCTATTGAAATTCTTTTCAGTCGGCATTGTCCAATCTGGTATGGATATGGTGGTGGGCTTAAGCTGTTGGAGAGAGTTGCTTATATAAATGCCGTCATATATCCCATTTTTTCCGTTCCCCTGCTGATTTACTGTGCTTTACCTGCCATTTGCCATCTCAGTGGGAAGTCTATCATTAGTCCGATTACTTATGAGGCAAACATCTGGTTCATGCTTGTTGTATTGTCTATTTTCGCACATGGGTTTCTTGAGCTTAGGTGGAGTGGTGTAAGTCTTCAAGAGCGGTGGAGAAATCAGCAGTTTTGGGTGATTGCTGGTGTATCTTCCCATTTCTTTGCTATTTTCCAGGGTTTGTTTAAGGTCATGCTGGGTTTAAATACAAGGTCAAGCACATTGATGAAGACACATGATGAGGACAGTGCCATCGAGTTTTATAAATTCAAATGGACATCACTTCTGATCCTGCCAACAACATTGATTCTCATCAACTTGTGGGCTGTTGTTGCAATGATCTTTTCAATAGTTGTCCATGGCTATGGGTCTTTTGGCCCACTGTTTGCAAAGCTGTTTTTCTCATTCTGTGTGATTGTTCACCTATACCCATTCTTGAAGGGATTATTAGTTCGGAAGCACAATATTCCAACAGTAGTCATACTATGGTCTCTAATTTTAGCAACCCTATTCTGTCTGCTGTGGGTTCGACTTGATCCTTTTACCACTAGAAATTGTTTGCCACTTTGTGGAGAGCTCCTTGTATCTCTGGCTATCATACCACTATGCTGTATCTTTAACTTAGTAATTTACCTAATAAAATTACATGGCTCTAGAGGTGTTATTCATTTGTCAAGTTTGATTTCATTTTCTGACAAATTGAGGGCTAACTTTATTTGA 2715 41.62 MSFNSNIWEERLCQWKLARERLLRRTGSQEEIPDPSDLGSVDEMELRQPEMDNESRQFLSRKVPIPPSMIYPYRVSVIFRLVILAFFLRYRLTHPVHNAYGLWLASVFCEVWFSVSWILDQLPKWQPVNRQTFPERLCMRYNQPGKPSGLASVDVFVSTADPLKESPIVISNTILSILSVDYPAEKVSCYVSDEGAARLTLETLSLTCDFARKWVPFCKKFQIEPPSPESYFSQKVDHLKYNPYPTFSKERRLMKRRYEDFKAQINGLITKFQDVPSEGWTMKDGTPWPGNDIKNHLGMMQIIMGRGGPHGSDTRALPQVVYVSREKRPGFHHNNKAGAMNALVRVSALLTNGTYILNLDSDHYINNSRTFLEAMCFLMDPSNQKICFVQFPQRFEGVDANDRYGSHNTIFYDINLKGFDGIQGPFYLGTGCFLYRKALCGYDPSFEQKILNTRWLDLRMKRPSDNHGHYFSDASDESSSSLLVQELNSLEREFPSSFQSMEMCFGQAPLLIASNFVDDDIFSSYATIEEILRAAIHVISCDYEDKTAWGIEVGWIYGSQTGDVLTGLKMHARGWRSVYCMPVRAAFRGSAPINLSDRLTQVLFWATSSIEILFSRHCPIWYGYGGGLKLLERVAYINAVIYPIFSVPLLIYCALPAICHLSGKSIISPITYEANIWFMLVVLSIFAHGFLELRWSGVSLQERWRNQQFWVIAGVSSHFFAIFQGLFKVMLGLNTRSSTLMKTHDEDSAIEFYKFKWTSLLILPTTLILINLWAVVAMIFSIVVHGYGSFGPLFAKLFFSFCVIVHLYPFLKGLLVRKHNIPTVVILWSLILATLFCLLWVRLDPFTTRNCLPLCGELLVSLAIIPLCCIFNLVIYLIKLHGSRGVIHLSSLISFSDKLRANFI* 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4819894 4828095 + Vvi7g486 Vvi7g486 789352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g486 904 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING] 6 850 - -
Vvi7g486 904 SUPERFAMILY Nucleotide-diphospho-sugar transferases 168 447 IPR029044 -
Vvi7g486 904 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 6 850 - -
Vvi7g486 904 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 308 444 IPR029044 -
Vvi7g486 904 Pfam Cellulose synthase 153 850 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g486 K10999 - vvi:100252166 1729.92