Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g512 ATGTTGGCCTCGAGGAGAGGGGATATACATTCAAGAGAGAGCGCCATGCAGACTGGATCATCATGCTTGGCGGAGAGGGGAATAAATAAGGGAACCAAAATGATAGGAAAAGCAGTAGTTTCAGGGATATCTCTGTTCCTTCCCAACTCCCGAAGGCTTCTCGGAGAAATTGAAGTACTTGGCCATGATGGGTATCCCACCTGGTTCTCAGCCACGGACAGAAAGCTTTTGGCTTTACAAGACAACGGCAGGCTTACGCCTAACGCTATTGTGGCCAAGGATGGCAGCGGACATTTCACGACTATTGCTGCAGCTCTCGCCGCCTACCCCAAGAACCTCAAAGGAAGATATGTTATCTACGTGAAGGCCGGAATCTACCGCGAGTACATTACCGTCACCAAAGATCATGTTAATGTGTACATGTACGGAGATGGGCCCAGGAAGACCATTGTCACTGGAACCAAATGCTACCGCGACGGAATCACCACTTACAAGACTGCCACATTCTCGGCCATTGGAAAGGGGTTTGTTGCGAGGTCGATGGGATTCGTCAACACCGCAGGTCCGGACGGGCACCAGGCTGTTGCTCTCCGCGTCCAATCAGATATGTCAGCATTCTTCAACTGCAGAATGGACGGGTACCAAGACACCTTGTACGTCCAGGCCCATCGCCAGTTCTACCGCAATTGTGTCATCTCGGGCACCATAGACTTCATCTTCGGTGACTCGACGACTGTGATCCAGAACTCCTTGATCATAGTAAGAAGGCCAAATGACAAACAACAAAACACAGTGACTGCACAAGGAAAAACTGAGAAGCGTGAAACCACTGGATTGGTGATCCACGATTGCAGAATCGTCCCAGAGCAAAAACTGTTCCCTGACAGGTTCAAGATCCCTTCATTCTTGGGTCGTCCATGGAAGCCGTACTCAAAGACGATTATAATGGAGACGACCTTGGGAGATTTCATCCAACCAGCTGGGTGGACGCCGTGGGCTGGGAAGTTCGTCCCGAACACACTCCTCTACGCTGAGTATGGGAACCTTGGCCCTGGTGCAAACACCCACAGCAGGGTGACATGGAAGGGTTACAGGATCATCAAGACCAGGAACGAGGCTCTTCAGTACACGGTCAACTCATTCATTCAGGGAAACCTCTGGCTGAAACAAATTAATATCCCTTATCTGCCAGGTCTCAAACGTTGA 1206 50.33 MLASRRGDIHSRESAMQTGSSCLAERGINKGTKMIGKAVVSGISLFLPNSRRLLGEIEVLGHDGYPTWFSATDRKLLALQDNGRLTPNAIVAKDGSGHFTTIAAALAAYPKNLKGRYVIYVKAGIYREYITVTKDHVNVYMYGDGPRKTIVTGTKCYRDGITTYKTATFSAIGKGFVARSMGFVNTAGPDGHQAVALRVQSDMSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTIDFIFGDSTTVIQNSLIIVRRPNDKQQNTVTAQGKTEKRETTGLVIHDCRIVPEQKLFPDRFKIPSFLGRPWKPYSKTIIMETTLGDFIQPAGWTPWAGKFVPNTLLYAEYGNLGPGANTHSRVTWKGYRIIKTRNEALQYTVNSFIQGNLWLKQINIPYLPGLKR* 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5026785 5031256 - Vvi7g512 Vvi7g512 789378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g512 401 PANTHER PECTINESTERASE 4-RELATED 44 399 - -
Vvi7g512 401 SUPERFAMILY Pectin lyase-like 87 398 IPR011050 -
Vvi7g512 401 Pfam Pectinesterase 88 385 IPR000070 GO:0030599|GO:0042545
Vvi7g512 401 ProSitePatterns Pectinesterase signature 2. 232 241 IPR033131 -
Vvi7g512 401 PANTHER PECTINESTERASE 44 399 - -
Vvi7g512 401 Gene3D - 82 399 IPR012334 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g512 Vvi14g32 ECH
Vvi5g259 Vvi7g512 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g512 K01051 - vvi:100241799 734.176