Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g527 | ATGCATGCACACACAAATATTGTGAAAATTGGCACTTCAGTGAAGATCACTGTTGGTTCTCATGTTTGGGTTGAAGACTCGGCATTGGTTTGGATTGATGGACAAGTATCAAAGATTACTGGACAGGATGCTGAGATACAAACTAGTAATGAAAAGACGGTGGTTGCAAATTTATCAAAATTATATCCAAAAGATATGGAGTTTCCTGCCCATGGAGTTGCTGACATGACTAAGCTTTCATATTTGCATGAGCCTGGAGTTCTGCAGAATTTGGCAATTAGATATGAACTCAGTCAAATCTATACTTACACTGGAAATATTCTTATTGCCATCAATCCATTCCAAGGTCTTCCTCATTTATATGATACACACGCTATGGAGAAATACAAGGGAGCACCACTTGGAGAATTGAGCCCTCATGTTTTTGCCATTGCTGATGTTGCTTATAGGGATATGGCCAATGAGGGGAAAGGCAACTCCATTCTGGTCAGTGGTGAAAGTGGGGCTGGTAAGACAGAAACCACTAAAATGCTTATGCGCTACCTTGCTTATTTGGGTGGCAATACTGTTACAGAAGGACGGTCTGTTGAACAAAAAGTTCTGGAATTGAAATGCCCCAAGACTTGTGGGCTAGATCAAGTCAAAATCATGTTGTTGGTTTCTAACATGACAAAAGTTTCTGATATAGCGACCTCCAAAAAATTAAGGTGTGAAAACTGTAGATTTTGGACATGGGCAGGAGCACAGAATCCTCCCTGTATACCAGAGAGAAGGAACAATATATTAGAAGGTGAGTTGTGGCATCCCATTTTGCCTAAGGAGAAGAAATTCCTGGCATTCATAAGGAGTGATGACTCTGAAATATGTGGATATGTTTCAGACAATAACATGATAAAAAGAATAGAAATCAATAAATTATCAATATTAAATTGCCAAAGTACCCTTAAGTTATACAATATTTCGATTTCTCCAGATTCAAGAAGGAAAAACCAATCAAATCCGGTTCTTGAAGCATTTGGCAATGCAAAAACTGTCAGAAATAACAATTCAAGCCGTTTTGGTAAATTTGTTGTGATTCAATTTGATAAGCATGGGCGAATATCAGGGGCAGCCATTAGAACTTATCTTCTTGAGAGATCTCGTGTTTGCCAAATTTCAGATCCTGAACGCAACTATCATTGTTTTTACCATCTTTGTGCAGCACCACCAGAGGAAATCGAGAGATATAAGTTGGGAAATCCTAAATCATTTCACTACCTTAATCAATCAAATTGCCATGAACTGCTGGATGTAAATGATGCCCAGTATTATCTTGCTACTAGAAGAGCTATGGATATTGTTGGAATAAGTGAAAAGGAACAGGAGGCTATTTTCAGAGTTGTGGCTGCAATTCTTCATCTTGGTAATATTGATTTTGCTAAGGGGGAAGAAGTTGATTCATCAGTTTTGAAAGATGACAAAGCTAAATTCCATCTTCAAATGACTTCAGAACTTCTCATGTGTGATCCTCATGCATTGGAAGATGCACTATGTAAGCGAGTGATGGTCACACCTGAAGAAGTTATCAAGAGAAGTCTTGATCCTCTTGGTGCTGCAGTTAGCAGGGATGGCTTAGCGAAGACAATATATTCTCGCTTGTTTGACTGGTTGGTGAATAAGATTAATTTCTCAATTGGGCAAGATCCTAATTCAAAATCTACGATTGGGGTCCTTGACATCTATGGTTTTGAAAGCTTCAAAACTAATAGTTTTGAACAGTTCTGTATTAATTTCACAAATGAGAAGCTGCAACAACATTTTAACCAGCATGTATTTAAGATGGAGCAAGAGGAGTACTCAAAAGAGGGAATTGACTGGAGCTACATAGAATTTATTGATAATCAAGATGTCTTGGATCTTATTGAAAAGAAACCTGGAGGAATCATTGCCCTGCTTGATGAAGCTTGTATGTTTCCAAAGTCAACCCATGAGACATTTTCGAATAAGCTTTATCAGACATTCAAAGTTCACAAACGCTTTATCAAGCCAAAGTTGGCTCGCACAGATTTCACCATTGCTCATTATGCAGGAGAAGTTCAATACCAGTCTGATCAATTTCTAGACAAAAACAAAGACTATGTTGTTCCTGAGCATCAGGACTTGTTAAGTGCCTCCAAATGTTGTTTTGTTGCAGGCCTTTTCCCTCTACTTTCTGAGGAGACAATGAAATCTTCGAAGTTTTCCTCTATTGGTTCTCATTTTAAGCTACAACTACAACATTTAATGGACACACTTAATTCCACACAACCTCATTACATTAGATGTGTGAAGCCCAACACTCTTTTAAAGCCTGCCATATTTGAGAATGCCAATGTCATGCAACAACTACGTTCTGGTGGCGTTCTAGAGGCAATTAGAATCAGTTGTGCTGGATATCCTACTCACAGGACATTTTCTGAATTTGTAAATCGGTTTCATATTCTTTCTCCAGAGGTTTTGACAGAGAATCATGAAGAGAAGTTTGTATGTCAAAAGATTCTGGAAAAGTTGGGGTTTACCGGGTTTCAGTTTACATGGGAATCAGACACTAGCTCAATCATTCCGAAGCCTTGCTCCAAAGCCAGTGAGAGGCAAAGATTGATTTTATTAGGAAAAATTAAAACTGATTTTTCCAAAGCATTCTCTGCTCCGCCATCTGATTCTGCAACACAACAGATTGGAAATACAAAAGTTTTCCTGAGAGCTGGTCAGATGGCTGAGTTAGATGCACGAAGAGCAGAAGTACAGGGAAATGCAATTAAGATTATTCAAAGGCGGACTAGAACTCATATTGCTCGTAAACAGTATGTTGCTTTGCGGGTGGCGACTATTCATGCACAATCTCTATGGAGAGAAAAAGTTGCTTGCAAGTTATATGCACACATGAGGCAGGAGGGGGCTGCAATTAAAATTCAGAAGAATCTTCGTAGACACCTGGCCAGAAAGGTCTACACCAAACTCATGTCTTGTGCACTTGTCTTGCAGACAGGTTTACGAGCAATGGCTGCTCATGATGAATTCAGATATAGAAAGGAAACCAAGGCAGCAATTATCATTCAGGCCCGTTGGCGCTGTCATAGAGATTTTTCATGCTATAAGAAACTCAAAAGAGCATCAATCATATCACAATGTGGATGGAGGGGGAGAATTGCCAGGAAAGAGCTGAGACAACTAAGCATTGCTGCTAAAGAAACAGGTGCACTCCAGGAAGCCAAAGCTAAGCTTGAAAAACAAGTGGAGGAGCTCACAAGAAGTTTGCAGTTGGAAAGACGTTTGAGGGCTGAACTGGAAGAAGCAAATGAACAGGAAATAACAAAGTTGCAACAATCCTTACGAGCTATGCGGAATGAAGTTGATGAAACAAATGCATTGCTTGTCAAGGAATGTGAGGCTGCTGAGAGGTCATTTGAAGAAGCACCTCCTATTATCAAAGAAACCCTCTCTCTTGTTGAAGATACTGACAAGATTAATAATCTATCTGCAGAGGTGGAAAAATTGAAGGCTTTGCTGCAATCAGAAAAACAAAGAGCTGATGACTTTGAAAGGAAATTGGAAGAAGCCGAGGAATCCAGTGAAGCAAGACGTAAGAGGTTAGAAGAAACTGAGAGAAGAGTTCAGCAACTCCAGGAATCTTTGAACAGGATGATATACAGCATGTCAGAACAGGTCTCAGCGCTGAAAATGATCTTGCATACGTCGTCAAACTCGAGTTCAACATCAGGGTCTATTGCTAGATATGACCGGGTTGATGTCGTTTCTTCTACCTCTGATGCTACATCCACTGCCTCTGATTTTACTTTTCCAACCCCTGTTCCAAGTTCAGTGACTTACTCTTCTTTCCATCCGGATGCTCTCCAGATGATTGTTCAGGATCTTTCAGTAACTGAAATTTCAGGATCTGAACACTGGGAAAGCGATCGGGAGGGGGCATTCGATGACTTTTTTTGA | 3966 | 39.76 | MHAHTNIVKIGTSVKITVGSHVWVEDSALVWIDGQVSKITGQDAEIQTSNEKTVVANLSKLYPKDMEFPAHGVADMTKLSYLHEPGVLQNLAIRYELSQIYTYTGNILIAINPFQGLPHLYDTHAMEKYKGAPLGELSPHVFAIADVAYRDMANEGKGNSILVSGESGAGKTETTKMLMRYLAYLGGNTVTEGRSVEQKVLELKCPKTCGLDQVKIMLLVSNMTKVSDIATSKKLRCENCRFWTWAGAQNPPCIPERRNNILEGELWHPILPKEKKFLAFIRSDDSEICGYVSDNNMIKRIEINKLSILNCQSTLKLYNISISPDSRRKNQSNPVLEAFGNAKTVRNNNSSRFGKFVVIQFDKHGRISGAAIRTYLLERSRVCQISDPERNYHCFYHLCAAPPEEIERYKLGNPKSFHYLNQSNCHELLDVNDAQYYLATRRAMDIVGISEKEQEAIFRVVAAILHLGNIDFAKGEEVDSSVLKDDKAKFHLQMTSELLMCDPHALEDALCKRVMVTPEEVIKRSLDPLGAAVSRDGLAKTIYSRLFDWLVNKINFSIGQDPNSKSTIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYSKEGIDWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKVHKRFIKPKLARTDFTIAHYAGEVQYQSDQFLDKNKDYVVPEHQDLLSASKCCFVAGLFPLLSEETMKSSKFSSIGSHFKLQLQHLMDTLNSTQPHYIRCVKPNTLLKPAIFENANVMQQLRSGGVLEAIRISCAGYPTHRTFSEFVNRFHILSPEVLTENHEEKFVCQKILEKLGFTGFQFTWESDTSSIIPKPCSKASERQRLILLGKIKTDFSKAFSAPPSDSATQQIGNTKVFLRAGQMAELDARRAEVQGNAIKIIQRRTRTHIARKQYVALRVATIHAQSLWREKVACKLYAHMRQEGAAIKIQKNLRRHLARKVYTKLMSCALVLQTGLRAMAAHDEFRYRKETKAAIIIQARWRCHRDFSCYKKLKRASIISQCGWRGRIARKELRQLSIAAKETGALQEAKAKLEKQVEELTRSLQLERRLRAELEEANEQEITKLQQSLRAMRNEVDETNALLVKECEAAERSFEEAPPIIKETLSLVEDTDKINNLSAEVEKLKALLQSEKQRADDFERKLEEAEESSEARRKRLEETERRVQQLQESLNRMIYSMSEQVSALKMILHTSSNSSSTSGSIARYDRVDVVSSTSDATSTASDFTFPTPVPSSVTYSSFHPDALQMIVQDLSVTEISGSEHWESDREGAFDDFF* | 1322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5731112 | 5780724 | + | Vvi7g527 | Vvi7g527 | 789393 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g527 | 1321 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 450 | 583 | - | - | |
| Vvi7g527 | 1321 | ProSiteProfiles | Myosin motor domain profile. | 71 | 919 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | Gene3D | - | 584 | 732 | - | - | |
| Vvi7g527 | 1321 | PRINTS | Myosin heavy chain signature | 101 | 120 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | PRINTS | Myosin heavy chain signature | 158 | 183 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | PRINTS | Myosin heavy chain signature | 567 | 595 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | PRINTS | Myosin heavy chain signature | 620 | 648 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | Gene3D | - | 1020 | 1068 | - | - | |
| Vvi7g527 | 1321 | Gene3D | - | 972 | 1019 | - | - | |
| Vvi7g527 | 1321 | Gene3D | - | 922 | 971 | - | - | |
| Vvi7g527 | 1321 | Gene3D | Kinesin motor domain | 21 | 205 | IPR036961 | - | |
| Vvi7g527 | 1321 | Gene3D | Kinesin motor domain | 733 | 804 | IPR036961 | - | |
| Vvi7g527 | 1321 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 17 | 66 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | Gene3D | Kinesin motor domain | 323 | 434 | IPR036961 | - | |
| Vvi7g527 | 1321 | ProSiteProfiles | IQ motif profile. | 922 | 949 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | Pfam | IQ calmodulin-binding motif | 973 | 990 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | Pfam | IQ calmodulin-binding motif | 924 | 942 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | Pfam | IQ calmodulin-binding motif | 1019 | 1033 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | SMART | MYSc_2a | 65 | 920 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | ProSiteProfiles | IQ motif profile. | 970 | 995 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | CDD | MYSc_Myo11 | 85 | 849 | IPR036018 | - | |
| Vvi7g527 | 1321 | Coils | Coil | 1067 | 1130 | - | - | |
| Vvi7g527 | 1321 | SMART | iq_5 | 921 | 943 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | SMART | iq_5 | 1040 | 1062 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | SMART | iq_5 | 1017 | 1039 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | SMART | iq_5 | 969 | 991 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | Gene3D | - | 805 | 920 | - | - | |
| Vvi7g527 | 1321 | PANTHER | MYOSIN-9 | 897 | 1256 | - | - | |
| Vvi7g527 | 1321 | PANTHER | MYOSIN-9 | 15 | 202 | - | - | |
| Vvi7g527 | 1321 | PANTHER | MYOSIN-9 | 331 | 850 | - | - | |
| Vvi7g527 | 1321 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 45 | 970 | IPR027417 | - | |
| Vvi7g527 | 1321 | ProSiteProfiles | IQ motif profile. | 1041 | 1070 | IPR000048 | GO:0005515 | |
| Vvi7g527 | 1321 | Pfam | Myosin head (motor domain) | 74 | 202 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | Pfam | Myosin head (motor domain) | 331 | 844 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | PANTHER | MYOSIN | 897 | 1256 | - | - | |
| Vvi7g527 | 1321 | PANTHER | MYOSIN | 331 | 850 | - | - | |
| Vvi7g527 | 1321 | PANTHER | MYOSIN | 15 | 202 | - | - | |
| Vvi7g527 | 1321 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 972 | 1070 | IPR027417 | - | |
| Vvi7g527 | 1321 | Pfam | Myosin N-terminal SH3-like domain | 18 | 58 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi7g527 | 1321 | Coils | Coil | 1155 | 1224 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g527 | K10357 | - | vvi:100265237 | 1767.67 |