Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g530 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTTTTGAGGAGAAAATGTGTGAGGGGTTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGCGCTGCCCACTTTGCTGCCATTCATAAGGTTTTTGGTGCAAGCAATGTGTCCAAACTCCTCGGTCACCTACCGGTGAGTGACAGGTGTGAAGCTGCGGTTACCATTGCTTATGAAGCTCAAGCCAGACTTCAAGATCCCATCTATGGATGTGTCTCACACATTTTTGCCCTCCAGCAGCAGGTTGTTAATCTACAAGCACAGCTAGCTTCTCTGAAGGAGCAAGCATCTCAAAGCCTTTTCAATGGGTCCAGTGCTGGAAACCTCAATGAGAAATTCTTTGGGAAACTCCCTTCTTACCAGCAAGACTTTCAGAGTTGGTTTCAGTTGGAGAATTTGAACACAGTGCCACAGTTTGATCCAAACCTCGCCAGTAATTCGGAAACCATGCCGTATTCCCAAAGTGGGTTCGTGGACCCTAGCCCTATGGAGAATTATAAAAATTCAATGTTCCCGGAGGAAAATGTCTCCTTCGCCAGTTTCGAAGAGGCTTCTCATTCCATGGCTTCTCTGGACATGCAAGGAAACAGAAGGAAATGGGCTTACCAAGATGATGCTGACGAACTCCAGTCAGTGGCCTTTGGCTATATCCGGCATTCATGA 699 46.78 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLGHLPVSDRCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQASQSLFNGSSAGNLNEKFFGKLPSYQQDFQSWFQLENLNTVPQFDPNLASNSETMPYSQSGFVDPSPMENYKNSMFPEENVSFASFEEASHSMASLDMQGNRRKWAYQDDADELQSVAFGYIRHS* 233
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 5837980 5838834 + Vvi7g530 Vvi7g530 789396
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g530 232 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Vvi7g530 232 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 231 - -
Vvi7g530 232 Coils Coil 87 107 - -
Vvi7g530 232 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Vvi7g530 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 231 - -
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15044 PF03195 LOB 3.50E-36 No_clan Vvi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g530 K13945 - vvi:100266975 470.314