Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g530 | ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTTTTGAGGAGAAAATGTGTGAGGGGTTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGCGCTGCCCACTTTGCTGCCATTCATAAGGTTTTTGGTGCAAGCAATGTGTCCAAACTCCTCGGTCACCTACCGGTGAGTGACAGGTGTGAAGCTGCGGTTACCATTGCTTATGAAGCTCAAGCCAGACTTCAAGATCCCATCTATGGATGTGTCTCACACATTTTTGCCCTCCAGCAGCAGGTTGTTAATCTACAAGCACAGCTAGCTTCTCTGAAGGAGCAAGCATCTCAAAGCCTTTTCAATGGGTCCAGTGCTGGAAACCTCAATGAGAAATTCTTTGGGAAACTCCCTTCTTACCAGCAAGACTTTCAGAGTTGGTTTCAGTTGGAGAATTTGAACACAGTGCCACAGTTTGATCCAAACCTCGCCAGTAATTCGGAAACCATGCCGTATTCCCAAAGTGGGTTCGTGGACCCTAGCCCTATGGAGAATTATAAAAATTCAATGTTCCCGGAGGAAAATGTCTCCTTCGCCAGTTTCGAAGAGGCTTCTCATTCCATGGCTTCTCTGGACATGCAAGGAAACAGAAGGAAATGGGCTTACCAAGATGATGCTGACGAACTCCAGTCAGTGGCCTTTGGCTATATCCGGCATTCATGA | 699 | 46.78 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLGHLPVSDRCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQASQSLFNGSSAGNLNEKFFGKLPSYQQDFQSWFQLENLNTVPQFDPNLASNSETMPYSQSGFVDPSPMENYKNSMFPEENVSFASFEEASHSMASLDMQGNRRKWAYQDDADELQSVAFGYIRHS* | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 5837980 | 5838834 | + | Vvi7g530 | Vvi7g530 | 789396 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g530 | 232 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - | |
| Vvi7g530 | 232 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 231 | - | - | |
| Vvi7g530 | 232 | Coils | Coil | 87 | 107 | - | - | |
| Vvi7g530 | 232 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
| Vvi7g530 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 231 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15044 | PF03195 | LOB | 3.50E-36 | No_clan | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g530 | K13945 | - | vvi:100266975 | 470.314 |