Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g530 | ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAGTTTTTGAGGAGAAAATGTGTGAGGGGTTGTGTTTTTGCTCCTTATTTCTGCCATGAACAAGGCGCTGCCCACTTTGCTGCCATTCATAAGGTTTTTGGTGCAAGCAATGTGTCCAAACTCCTCGGTCACCTACCGGTGAGTGACAGGTGTGAAGCTGCGGTTACCATTGCTTATGAAGCTCAAGCCAGACTTCAAGATCCCATCTATGGATGTGTCTCACACATTTTTGCCCTCCAGCAGCAGGTTGTTAATCTACAAGCACAGCTAGCTTCTCTGAAGGAGCAAGCATCTCAAAGCCTTTTCAATGGGTCCAGTGCTGGAAACCTCAATGAGAAATTCTTTGGGAAACTCCCTTCTTACCAGCAAGACTTTCAGAGTTGGTTTCAGTTGGAGAATTTGAACACAGTGCCACAGTTTGATCCAAACCTCGCCAGTAATTCGGAAACCATGCCGTATTCCCAAAGTGGGTTCGTGGACCCTAGCCCTATGGAGAATTATAAAAATTCAATGTTCCCGGAGGAAAATGTCTCCTTCGCCAGTTTCGAAGAGGCTTCTCATTCCATGGCTTCTCTGGACATGCAAGGAAACAGAAGGAAATGGGCTTACCAAGATGATGCTGACGAACTCCAGTCAGTGGCCTTTGGCTATATCCGGCATTCATGA | 699 | 46.78 | MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLGHLPVSDRCEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKEQASQSLFNGSSAGNLNEKFFGKLPSYQQDFQSWFQLENLNTVPQFDPNLASNSETMPYSQSGFVDPSPMENYKNSMFPEENVSFASFEEASHSMASLDMQGNRRKWAYQDDADELQSVAFGYIRHS* | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 5837980 | 5838834 | + | Vvi7g530 | Vvi7g530 | 789396 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g530 | 232 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 105 | IPR004883 | - | |
Vvi7g530 | 232 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 1 | 231 | - | - | |
Vvi7g530 | 232 | Coils | Coil | 87 | 107 | - | - | |
Vvi7g530 | 232 | ProSiteProfiles | LOB domain profile. | 6 | 108 | IPR004883 | - | |
Vvi7g530 | 232 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 231 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15044 | PF03195 | LOB | 3.50E-36 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g530 | K13945 | - | vvi:100266975 | 470.314 |