Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g531 ATGGCCTCTGCAAGTGGCTCCCCTTGTGGTGCATGCAAGTTCCTGCGGAGGAAGTGTGCAGCTGACTGCGTTTTTGCGCCTTATTTCTGCTCGGAGCAAGGCCCGGCTCGGTTTGCCGCAATTCACAAGGTGTTTGGTGCCAGCAATGTGTCCAAGCTGTTGTTGCATGTGCCGGTGGCTGATCGCTGTGAGGCCGTCGTCACCATCGCTTATGAAGCTCAAGCCCGGATTAGAGATCCCGTCTATGGCTGCGTCGCCCACATCTTCGCCTTGCAGCAGCAGGTAGCATGCTTGCAAGCTCAGCTGATGCAGCTGAAGGCTCAACTGGCCAACAACACGGGGAATTTAGAGAATCAATGGCAGGGAAATGTTTCAGGAGCGCCTTCCTTTCAGAATTTTCCAGGTTACATGAACTCAGTATCGCCGCAGTGCTCACTGGAATTGATTGATCACAACAGTGATGGAATGACAATGCAAGATATCCAAAGTAGAGATGAATTTTCATTCCAAACTTGCTCTAGGAAAAGGCCACCCCACAATGACCTGGGTGAGCTTCAAGAACTGGCCCTCAGAATGATGAGAAACTGA 588 51.36 MASASGSPCGACKFLRRKCAADCVFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQLKAQLANNTGNLENQWQGNVSGAPSFQNFPGYMNSVSPQCSLELIDHNSDGMTMQDIQSRDEFSFQTCSRKRPPHNDLGELQELALRMMRN* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5846730 5847540 - Vvi7g531 Vvi7g531 789397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g531 195 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Vvi7g531 195 Coils Coil 88 115 - -
Vvi7g531 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 2 194 - -
Vvi7g531 195 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 194 - -
Vvi7g531 195 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15045 PF03195 LOB 1.20E-36 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g531 K13944 - vvi:100261792 381.333