Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g540 ATGGATCGATTCCACATGCATTTTTCCAACCATGGATCCGAAGCTCTTGTTTACATCAAAACCCATGAAAACCCAATCTATCAACCCTCCTCCCCTGCTTCAGACACTGCTTTCCCTATCTTAGCCATTGCTGTGCTAAGCATTATGGCCACGGCTTTCTTACTAGTTAGTTACTACATCTTCGTGATCAAGTGCTGCTTGAGCTGGCACCATATTGAACTGCTCAGACGGTTTTCTACCTCTCAATCTCGACAGCAGGAAGATCCACTGATGGACTATTCACCTACGTTTCTGAATCGTGGGCTGGATGAATCCTTGATTCACCAAATCCCAACTTTTCTGTTCAGAAGAGGACAGAGTGAAGAGGGAAGCTTCCATGGATGTGTGGTCTGTTTGAACGAGTTTCAAGAACATGATATGATAAGAGTTCTTCCCAACTGCAGCCATGCATTCCACTTGGATTGCATTGATATATGGCTACAAAGCAATGCTAATTGTCCCTTATGCAGATCAAGCATTTCAGGAACAACCCGGTACAGAAATGATCCGATCATTGCCCCAAGCTCTTCACCCCAAGATCCACGGCCATTCAGTGAGGCTCTCATGGGCGGTGATGATGATTTTGTGGTCATAGAATTGGGGGGAGGAGACGACAGAGGCGTCATACTACCACCAAGACAACAAGAAAGAGCTGATTCAAGAGAACTGTTGAAAGTTTCATTATGTTTCAAGTATGGGAGATGA 744 44.89 MDRFHMHFSNHGSEALVYIKTHENPIYQPSSPASDTAFPILAIAVLSIMATAFLLVSYYIFVIKCCLSWHHIELLRRFSTSQSRQQEDPLMDYSPTFLNRGLDESLIHQIPTFLFRRGQSEEGSFHGCVVCLNEFQEHDMIRVLPNCSHAFHLDCIDIWLQSNANCPLCRSSISGTTRYRNDPIIAPSSSPQDPRPFSEALMGGDDDFVVIELGGGDDRGVILPPRQQERADSRELLKVSLCFKYGR* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5941441 5942809 - Vvi7g540 Vvi7g540 789406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g540 247 SMART ring_2 128 169 IPR001841 -
Vvi7g540 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 175 IPR013083 -
Vvi7g540 247 SUPERFAMILY RING/U-box 107 182 - -
Vvi7g540 247 CDD RING-H2_PA-TM-RING 128 170 - -
Vvi7g540 247 Pfam Ring finger domain 128 170 IPR001841 -
Vvi7g540 247 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 236 - -
Vvi7g540 247 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Vvi7g540 247 PANTHER RING-H2 FINGER PROTEIN ATL16 1 236 IPR044600 GO:0016567|GO:0016740
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g674 Vvi7g540 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g540 K19041 - vvi:100242856 493.041