Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g548 ATGGCAAGAGATGAAGTCATCAAGACTACGTCAGGCGTGCAACTTGATTCAGACCCGCCGCCATGCCCCATTGACTCACGTGCATTAATCCCCTCCGGAAAAAACATAGCCTTCAATTCAATGGATTCTTCTTCCTTCTATCATCAATACCAAAGTTCAGAATTCTCACCTGAATCCTCATCGTTCGGTTCTTCGGAGTATTTCTCGTCCTGGGACGAGCCTCTTTTCCACCACAATTCACTTCCATTCAACATAAATGACTCGGACGAGATGATACTATTCGATATGCTAGCTGAGGGAGCTAGAGACTCGTCGGAAACAGCGTCATCCGTCGGAGGAGCAGCCAAGGAGGAGGAGGTGACTTCCAATGCTAAAGAGCCCACACCCAACAAGAAGGAGAAGGAGAAGACGTATAGGGGTGTCAGGAAGCGGCCATGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACCAGGCATGGGGTAAGGGTGTGGCTTGGTACATTTGATAGTGCCGAGGCTGCGGCTTTAGCATATGATCAAGCAGCATTTTCCATGAGGGGGACCATGGCGGTCCTCAATTTCCCGGTGGAGCGCGTGGTGGAGTCCCTAAGGGACATCAAGTACGCCTGCGAGGACGGAGGCTCCCCGGTGGTGGCGCTCAAGAGGAGGCACTCTATGAGAAGAAAATCAACTGAGGCAAGGAAGGAGGACATAACCGGCAGAGACGGGACAGTACATGCGAGCAGTGCCGAGAGAGGCAGCAAAAGTGTTGTTACGGTAGGGAGGAGGCTGAGCGTTGAAGATGACGAGAGGAGAGTTGCCGATAGATTCTTTAAGATTATGGAGTACCCACATAAGAGCATGGTAACTGCACTCATTCTCGTCAATGGCCACCATTACCTTCTTGTGGACTTGAGGTCCTCCACCTTCCACTGCCATTTCCATCTGGGTTTTGTGTGGGTCAAATCCATAGAGGCTGATTTGGAATTCTATGGGTGGGTTTTAGTTTAA 1011 50.94 MARDEVIKTTSGVQLDSDPPPCPIDSRALIPSGKNIAFNSMDSSSFYHQYQSSEFSPESSSFGSSEYFSSWDEPLFHHNSLPFNINDSDEMILFDMLAEGARDSSETASSVGGAAKEEEVTSNAKEPTPNKKEKEKTYRGVRKRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGTMAVLNFPVERVVESLRDIKYACEDGGSPVVALKRRHSMRRKSTEARKEDITGRDGTVHASSAERGSKSVVTVGRRLSVEDDERRVADRFFKIMEYPHKSMVTALILVNGHHYLLVDLRSSTFHCHFHLGFVWVKSIEADLEFYGWVLV* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6041361 6043169 + Vvi7g548 Vvi7g548 789414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g548 336 CDD AP2 138 196 IPR001471 GO:0003700|GO:0006355
Vvi7g548 336 MobiDBLite consensus disorder prediction 119 139 - -
Vvi7g548 336 PRINTS Ethylene responsive element binding protein signature 138 149 IPR001471 GO:0003700|GO:0006355
Vvi7g548 336 PRINTS Ethylene responsive element binding protein signature 161 177 IPR001471 GO:0003700|GO:0006355
Vvi7g548 336 MobiDBLite consensus disorder prediction 105 139 - -
Vvi7g548 336 Gene3D AP2/ERF domain 136 197 IPR036955 GO:0003700|GO:0006355
Vvi7g548 336 Pfam AP2 domain 138 187 IPR001471 GO:0003700|GO:0006355
Vvi7g548 336 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 71 237 - -
Vvi7g548 336 SMART rav1_2 137 201 IPR001471 GO:0003700|GO:0006355
Vvi7g548 336 SUPERFAMILY DNA-binding domain 137 197 IPR016177 GO:0003677
Vvi7g548 336 MobiDBLite consensus disorder prediction 226 246 - -
Vvi7g548 336 MobiDBLite consensus disorder prediction 1 26 - -
Vvi7g548 336 ProSiteProfiles AP2/ERF domain profile. 137 195 IPR001471 GO:0003700|GO:0006355
Vvi7g548 336 PANTHER DNA-BINDING DOMAIN 71 237 IPR044808 GO:0003700|GO:0009873
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15049 PF00847 AP2 8.90E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g548 K14516 - vvi:100246426 348.206