Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g573 ATGATAAAATATTCAATAAAGAAGTGGGGCTTTAAAGAAATGATGAGAGCCTTGGGAAATTTTTCCCAAATTGTAAATAATCTCCATTCAAAAACTTATCTTCCCAAGGGGGTTATTCGTGGATGTTCAGATTGTAGTAATTGTCAGAAGGTAAGTGCAAGATGGCGTCCAGAAGATGCATGCACAGATATCCTTGAAGAGGCTCCTGTGTTCCACCCAACTGAAGAGGAGTTCAAAGACACGCTTAAGTATATTGCAAGTTTACGTCCAAGAGCAGAGCCATATGGAGTCTGCCGTATAGTCCCTCCTCCTTCCTGGCAACCACCATGCCATATTAAAGAAAAGAATGTATGGACAAGATCTAAATTTCCTACCCAAATTCAACGGATTGATGAGCTTCGAGATCAGTCCAGACGCTATGAAACCCAGGGCTTTAAATTTGAACCTGGTCCAGAGTTCACTTTGGAAACTTTTAAGAATTATGCAGATGATTTCAAGGGGCAGTATTTTTGCAAGAAAGATGAGGTCGCAGATTCAGATGTTAATTCAACTGTGTCCCAAAAGCAGTGGGAACCATCATTGGAGAATATTGAGGGTGAATATAGGCGAATTGTTGAGAATCCAACTGAAGAAATTGAGGTGCTTCATGGTGCTGACCTTGAAACTGGAGTTTTTGGAAGCGGATTTCCAAAAGTATCCAATCAGGAGCAGATGTCTGATCATGCACAATATTTTGAATCTGGCTGGAACTTAAATAATACCCCAAAGCTGCCCGGTTCTCTTCTTGCGTTTGAAAACTATGACATATTTCGTATTTTACAGCCTCGGCTACACGTAGGGATGTGCTTTTCATCACTTTGTTGGAAAGTTGAAGAGCACCACTTATACTCGCTGTGCTACATGCATTTGGGTGCACCTAAAATATGGTACAGTATCCCTGGGAGATATCGTCCAAAATTTGAGGCGGCTGTGAAGAAGTATTTTCCATACCTATCAGCAACACAGCCTGAGTTGCTTCCTAAGCTGGTAACCCAACTTTCCCCATCCACATTGAAGTCTGAGGGTATACCTACCTATCGTTGTATCCAGTATCCCAGGGAGTTTGTCCTTATCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGCTTTAATTGCACCGAGGCAGTAAATTTTGCTCCAGTTGACTGGTTACCACATGGGCAGAATACTGTGGAACTCTATTGTTTGCAGGGAAGAAGGACATCAATCTCCCATGACAAGCTGTTGTTTGGTGCAGCTAGGGAAGCTGTGAGGGCCCAGTGGGAAGTATCACTGTTGGGGAAGAGCACTTTGGATCATTTAAGGTGGAAAGAACTGTGTGGCAAGGATGGGATCTTAGCAAGTGCTCTAAAGTCACGTATCAAGTCAGAAGGCAGGAGAAGGGAATATCTTTGCACCTCTTCACAGTCTAGGAAGATGGACAAAGACTTCGATAGTGTCAGAAAGAGGGAATGCTGGACATGTTTCTATGATTTGCACCTGTCTGCAGCATGCTGTCAATGTTCCCCAGACAAATATGCATGTCTGAATCATGCAAAGCAGCTCTGTTCTTGCTCTTGGAGTGCCAAAACTTTCCTCTTCCGTTATGAAATGAGCAAGTTAGATCTCCTTGTTCAAGCCTTGGAAGGGAAATTAAGTTCTGTCTACAGGTGGGCTAGAGAAGATCTTGGGCTGGCTCTGTCTCGTTGTGTCTCAAACGATCAGTTAAAGGCATGTGGGTTTGTTAATAATCCATCCCCTACAGAGTCAAAACAAGAACAAAAATGTCAAGATGAAGTGCTCAAATCTCAAGATGTTGTAGAACCCAATGGCATTATTGAGAATTCTACTAATTGGATTTCAGAGATGAAAACACCAGCTGTGGTCCAAGCCTTAGAAAACCTGAAAAAGAGAGAACATGCAGTAGCATTTGCAATTAGTTCAAGTGGTACTGCAGATGATTCCTATTCAATGCAGAAAGAGAATCCATACATAGTTCCATCTGAAAGTACAAGTTCATCAAGTTTGTCAAGTTCCTCAGAATCTGATGAAGATATATCAGATGGCTTTCTGTTCAGGAAGAAACAATGCCTTTTTTCAGCTTACAATTCAAACTCTCCAGTTTATCATCTCAAAAAAGAAGCCTTGTCGTCTAAGCTCCCAAAAGATGATTCTAGTGAGCATAACATTGCCCAGCGCTTGATTCCAAGTTCCAGAGTTGGTCATTTGACTGATTTGGCTTCTGAGAAACAAATAACAAAAAGACCCCCATCTTGCTGTCGGAGTGATATTATTCTTCTCAGCGACGATGAGGGTGAGGATCCATGTCGGAAACTCTGCTGA 2364 42.13 MIKYSIKKWGFKEMMRALGNFSQIVNNLHSKTYLPKGVIRGCSDCSNCQKVSARWRPEDACTDILEEAPVFHPTEEEFKDTLKYIASLRPRAEPYGVCRIVPPPSWQPPCHIKEKNVWTRSKFPTQIQRIDELRDQSRRYETQGFKFEPGPEFTLETFKNYADDFKGQYFCKKDEVADSDVNSTVSQKQWEPSLENIEGEYRRIVENPTEEIEVLHGADLETGVFGSGFPKVSNQEQMSDHAQYFESGWNLNNTPKLPGSLLAFENYDIFRILQPRLHVGMCFSSLCWKVEEHHLYSLCYMHLGAPKIWYSIPGRYRPKFEAAVKKYFPYLSATQPELLPKLVTQLSPSTLKSEGIPTYRCIQYPREFVLIFPGAYHSGFDCGFNCTEAVNFAPVDWLPHGQNTVELYCLQGRRTSISHDKLLFGAAREAVRAQWEVSLLGKSTLDHLRWKELCGKDGILASALKSRIKSEGRRREYLCTSSQSRKMDKDFDSVRKRECWTCFYDLHLSAACCQCSPDKYACLNHAKQLCSCSWSAKTFLFRYEMSKLDLLVQALEGKLSSVYRWAREDLGLALSRCVSNDQLKACGFVNNPSPTESKQEQKCQDEVLKSQDVVEPNGIIENSTNWISEMKTPAVVQALENLKKREHAVAFAISSSGTADDSYSMQKENPYIVPSESTSSSSLSSSSESDEDISDGFLFRKKQCLFSAYNSNSPVYHLKKEALSSKLPKDDSSEHNIAQRLIPSSRVGHLTDLASEKQITKRPPSCCRSDIILLSDDEGEDPCRKLC* 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6483760 6490784 - Vvi7g573 Vvi7g573 789439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g573 787 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 24 139 - -
Vvi7g573 787 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 136 669 - -
Vvi7g573 787 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 139 - -
Vvi7g573 787 PANTHER LYSINE-SPECIFIC DEMETHYLASE 136 669 - -
Vvi7g573 787 SUPERFAMILY Clavaminate synthase-like 150 436 - -
Vvi7g573 787 Pfam C5HC2 zinc finger 499 549 IPR004198 -
Vvi7g573 787 ProSiteProfiles JmjN domain profile. 68 109 IPR003349 -
Vvi7g573 787 SMART JmjN_1 67 108 IPR003349 -
Vvi7g573 787 SMART cupin_9 243 409 IPR003347 -
Vvi7g573 787 Pfam JmjC domain, hydroxylase 277 392 IPR003347 -
Vvi7g573 787 Gene3D Cupin 53 393 - -
Vvi7g573 787 ProSiteProfiles JmjC domain profile. 243 409 IPR003347 -
Vvi7g573 787 Pfam jmjN domain 69 102 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g573 - - - vvi:100249688 1542.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g573 Blo05g00409 . Bda04g00506 . . Bpe06g00417 . . Cmo08g00271 . . . . . . Cpe17g00909 . Bhi09g01230 . . . . . . Cla09g00747 Cam09g0784 Cec09g0780 Cco09g0778 Clacu09g0795 . Cre09g0761 Cone17ag0685 . . . Lsi02g02177 Csa07g01613 . . . Blo10g00272 . . . . Bma09g00587 . . . . Cma08g00273 . Car08g00251 . . . . . . . . . . . . . . . . . . . Chy01g01475 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi14g610 . 1 1176 JUMONJI Transcription Factor Family AT1G08620 56.2 0.0e+00 1264.6
Vvi7g573 . 31 584 JUMONJI Transcription Factor Family AT1G08620 57.6 4.5e-203 705.7
Vvi10g644 . 79 882 JUMONJI Transcription Factor Family AT1G30810 57.8 1.0e-270 929.9
Vvi7g573 . 49 572 JUMONJI Transcription Factor Family AT1G30810 51.0 2.4e-160 563.1
Vvi10g644 . 111 882 JUMONJI Transcription Factor Family AT2G34880 53.8 2.1e-241 832.4
Vvi10g644 . 142 946 JUMONJI Transcription Factor Family AT4G20400 53.2 1.2e-256 883.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006657 1 4 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15051 PF02373 JmjC 6.80E-37 CL0029 Vvi TR