Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g573 ATGATAAAATATTCAATAAAGAAGTGGGGCTTTAAAGAAATGATGAGAGCCTTGGGAAATTTTTCCCAAATTGTAAATAATCTCCATTCAAAAACTTATCTTCCCAAGGGGGTTATTCGTGGATGTTCAGATTGTAGTAATTGTCAGAAGGTAAGTGCAAGATGGCGTCCAGAAGATGCATGCACAGATATCCTTGAAGAGGCTCCTGTGTTCCACCCAACTGAAGAGGAGTTCAAAGACACGCTTAAGTATATTGCAAGTTTACGTCCAAGAGCAGAGCCATATGGAGTCTGCCGTATAGTCCCTCCTCCTTCCTGGCAACCACCATGCCATATTAAAGAAAAGAATGTATGGACAAGATCTAAATTTCCTACCCAAATTCAACGGATTGATGAGCTTCGAGATCAGTCCAGACGCTATGAAACCCAGGGCTTTAAATTTGAACCTGGTCCAGAGTTCACTTTGGAAACTTTTAAGAATTATGCAGATGATTTCAAGGGGCAGTATTTTTGCAAGAAAGATGAGGTCGCAGATTCAGATGTTAATTCAACTGTGTCCCAAAAGCAGTGGGAACCATCATTGGAGAATATTGAGGGTGAATATAGGCGAATTGTTGAGAATCCAACTGAAGAAATTGAGGTGCTTCATGGTGCTGACCTTGAAACTGGAGTTTTTGGAAGCGGATTTCCAAAAGTATCCAATCAGGAGCAGATGTCTGATCATGCACAATATTTTGAATCTGGCTGGAACTTAAATAATACCCCAAAGCTGCCCGGTTCTCTTCTTGCGTTTGAAAACTATGACATATTTCGTATTTTACAGCCTCGGCTACACGTAGGGATGTGCTTTTCATCACTTTGTTGGAAAGTTGAAGAGCACCACTTATACTCGCTGTGCTACATGCATTTGGGTGCACCTAAAATATGGTACAGTATCCCTGGGAGATATCGTCCAAAATTTGAGGCGGCTGTGAAGAAGTATTTTCCATACCTATCAGCAACACAGCCTGAGTTGCTTCCTAAGCTGGTAACCCAACTTTCCCCATCCACATTGAAGTCTGAGGGTATACCTACCTATCGTTGTATCCAGTATCCCAGGGAGTTTGTCCTTATCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGCTTTAATTGCACCGAGGCAGTAAATTTTGCTCCAGTTGACTGGTTACCACATGGGCAGAATACTGTGGAACTCTATTGTTTGCAGGGAAGAAGGACATCAATCTCCCATGACAAGCTGTTGTTTGGTGCAGCTAGGGAAGCTGTGAGGGCCCAGTGGGAAGTATCACTGTTGGGGAAGAGCACTTTGGATCATTTAAGGTGGAAAGAACTGTGTGGCAAGGATGGGATCTTAGCAAGTGCTCTAAAGTCACGTATCAAGTCAGAAGGCAGGAGAAGGGAATATCTTTGCACCTCTTCACAGTCTAGGAAGATGGACAAAGACTTCGATAGTGTCAGAAAGAGGGAATGCTGGACATGTTTCTATGATTTGCACCTGTCTGCAGCATGCTGTCAATGTTCCCCAGACAAATATGCATGTCTGAATCATGCAAAGCAGCTCTGTTCTTGCTCTTGGAGTGCCAAAACTTTCCTCTTCCGTTATGAAATGAGCAAGTTAGATCTCCTTGTTCAAGCCTTGGAAGGGAAATTAAGTTCTGTCTACAGGTGGGCTAGAGAAGATCTTGGGCTGGCTCTGTCTCGTTGTGTCTCAAACGATCAGTTAAAGGCATGTGGGTTTGTTAATAATCCATCCCCTACAGAGTCAAAACAAGAACAAAAATGTCAAGATGAAGTGCTCAAATCTCAAGATGTTGTAGAACCCAATGGCATTATTGAGAATTCTACTAATTGGATTTCAGAGATGAAAACACCAGCTGTGGTCCAAGCCTTAGAAAACCTGAAAAAGAGAGAACATGCAGTAGCATTTGCAATTAGTTCAAGTGGTACTGCAGATGATTCCTATTCAATGCAGAAAGAGAATCCATACATAGTTCCATCTGAAAGTACAAGTTCATCAAGTTTGTCAAGTTCCTCAGAATCTGATGAAGATATATCAGATGGCTTTCTGTTCAGGAAGAAACAATGCCTTTTTTCAGCTTACAATTCAAACTCTCCAGTTTATCATCTCAAAAAAGAAGCCTTGTCGTCTAAGCTCCCAAAAGATGATTCTAGTGAGCATAACATTGCCCAGCGCTTGATTCCAAGTTCCAGAGTTGGTCATTTGACTGATTTGGCTTCTGAGAAACAAATAACAAAAAGACCCCCATCTTGCTGTCGGAGTGATATTATTCTTCTCAGCGACGATGAGGGTGAGGATCCATGTCGGAAACTCTGCTGA 2364 42.13 MIKYSIKKWGFKEMMRALGNFSQIVNNLHSKTYLPKGVIRGCSDCSNCQKVSARWRPEDACTDILEEAPVFHPTEEEFKDTLKYIASLRPRAEPYGVCRIVPPPSWQPPCHIKEKNVWTRSKFPTQIQRIDELRDQSRRYETQGFKFEPGPEFTLETFKNYADDFKGQYFCKKDEVADSDVNSTVSQKQWEPSLENIEGEYRRIVENPTEEIEVLHGADLETGVFGSGFPKVSNQEQMSDHAQYFESGWNLNNTPKLPGSLLAFENYDIFRILQPRLHVGMCFSSLCWKVEEHHLYSLCYMHLGAPKIWYSIPGRYRPKFEAAVKKYFPYLSATQPELLPKLVTQLSPSTLKSEGIPTYRCIQYPREFVLIFPGAYHSGFDCGFNCTEAVNFAPVDWLPHGQNTVELYCLQGRRTSISHDKLLFGAAREAVRAQWEVSLLGKSTLDHLRWKELCGKDGILASALKSRIKSEGRRREYLCTSSQSRKMDKDFDSVRKRECWTCFYDLHLSAACCQCSPDKYACLNHAKQLCSCSWSAKTFLFRYEMSKLDLLVQALEGKLSSVYRWAREDLGLALSRCVSNDQLKACGFVNNPSPTESKQEQKCQDEVLKSQDVVEPNGIIENSTNWISEMKTPAVVQALENLKKREHAVAFAISSSGTADDSYSMQKENPYIVPSESTSSSSLSSSSESDEDISDGFLFRKKQCLFSAYNSNSPVYHLKKEALSSKLPKDDSSEHNIAQRLIPSSRVGHLTDLASEKQITKRPPSCCRSDIILLSDDEGEDPCRKLC* 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6483760 6490784 - Vvi7g573 Vvi7g573 789439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g573 787 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 24 139 - -
Vvi7g573 787 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 136 669 - -
Vvi7g573 787 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 139 - -
Vvi7g573 787 PANTHER LYSINE-SPECIFIC DEMETHYLASE 136 669 - -
Vvi7g573 787 SUPERFAMILY Clavaminate synthase-like 150 436 - -
Vvi7g573 787 Pfam C5HC2 zinc finger 499 549 IPR004198 -
Vvi7g573 787 ProSiteProfiles JmjN domain profile. 68 109 IPR003349 -
Vvi7g573 787 SMART JmjN_1 67 108 IPR003349 -
Vvi7g573 787 SMART cupin_9 243 409 IPR003347 -
Vvi7g573 787 Pfam JmjC domain, hydroxylase 277 392 IPR003347 -
Vvi7g573 787 Gene3D Cupin 53 393 - -
Vvi7g573 787 ProSiteProfiles JmjC domain profile. 243 409 IPR003347 -
Vvi7g573 787 Pfam jmjN domain 69 102 IPR003349 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15051 PF02373 JmjC 6.80E-37 CL0029 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g573 - - vvi:100249688 1542.71