Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g582 ATGGATTCTGCAAGGAGTTGGTTTCAGAAGTTTCAACCGCGGGAGCGAGTGAGGCCTTCAGCTAGGAAGAAGGAAGGCACAGGTGCTGAAAAAGAAGAGACAGGTCCTACAGCAGGAGATGAAACACCTTCAAATGTCACAAAGCAGAAAGTTGCAGCTGCAAAGCAGTATATTGAGAACCATTACAAGGAGCAAATGAAGAGTCTTCAGGAGAGGAGGGAACGGCGAAATATACTGGAAAAGAAGTTGGCTGATGCTGACGTCTCCGAGGAAGATCAGAATAACCTGCTAAAACACTTGGAGAAGAAGGAAACTGAATACATGCGCCTTCAAAGGCATAAGATGGGTGCTGATGATTTTGAATTATTGACGATGATCGGGAAGGGAGCATTTGGAGAGGTAAGAGTCTGTAGAGAGAAGACAACGGGTAATGTGTATGCAATGAAAAAGCTTAAGAAGTCAGAGATGCTTCGACGAGGCCAGGTGGAGCATGTTAAAGCTGAAAGGAATCTGCTTGCAGAGGTGGACAGCAATTGCATTGTTAAACTTTACTGTTCTTTCCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGAGGAGATATGATGACTTTACTCATGAGAAAGGATACCTTGACTGAAGATGAGGCTAGATTTTATGTTGGAGAAACAGTTTTGGCTATTGAATCTATTCACAAACATAATTACATTCATAGAGATATTAAACCCGATAACTTGCTACTTGATAAATATGGTCACTTAAGACTATCAGATTTTGGACTATGTAAGCCATTGGACTGCACACCGAAGCGCACCCAACAAGAGCAACAACAGCATTGGCAGAAGAACAGGAGGATGCTTGCTTATTCTACTGTTGGGACACCAGACTATATCGCTCCAGAAGTTTTATTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGTGCTATCATGTATGAAATGCTTGTGGGGTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGTAGGAAGATTGTAAATTGGAGAACTCATTTAAAGTTTCCTGAAGAAGCAAGTCTATCTTCCGAAGCAAAAGATCTTATCAGTAAACTTTTGTGTAATGTAAGCCAGAGGCTGGGATCTAAAGGCGCAGATGAAATAAAGGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTGAAAAGTTCGAAGAGTCTGAGAGCCTAGGTCAATCATCATCAAAAAGTGGTCCTTGGAGAAAGATGCTTTCATCGAAGGACATGAACTTTGTGGGTTATACGTATAAGAACTTTGAAATCATCAATGATTATCAAGTTCCTGGAATGGCTGAATTGAAGAAAAAAACCAACAAACCGAAGAGAGCATCCATCAAGTCACTTTTTGAATCGGATGGATCTGATACAGTTGCTGATAATCAACCTGTTCAAGGGAGCTTTTTGAACCTCTTGCCTCCCCAACTAGAAGTGTCTCGAGATCAGAATGAATCATCATAA 1581 40.86 MDSARSWFQKFQPRERVRPSARKKEGTGAEKEETGPTAGDETPSNVTKQKVAAAKQYIENHYKEQMKSLQERRERRNILEKKLADADVSEEDQNNLLKHLEKKETEYMRLQRHKMGADDFELLTMIGKGAFGEVRVCREKTTGNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCTPKRTQQEQQQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPEEASLSSEAKDLISKLLCNVSQRLGSKGADEIKVHPWFEGTEWDRLYLMEAAFIPEVRDELDTQNFEKFEESESLGQSSSKSGPWRKMLSSKDMNFVGYTYKNFEIINDYQVPGMAELKKKTNKPKRASIKSLFESDGSDTVADNQPVQGSFLNLLPPQLEVSRDQNESS* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6587989 6611981 + Vvi7g582 Vvi7g582 789448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g582 526 MobiDBLite consensus disorder prediction 1 47 - -
Vvi7g582 526 MobiDBLite consensus disorder prediction 490 509 - -
Vvi7g582 526 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 41 275 - -
Vvi7g582 526 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 282 496 - -
Vvi7g582 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Vvi7g582 526 Coils Coil 62 82 - -
Vvi7g582 526 SUPERFAMILY Protein kinase-like (PK-like) 93 448 IPR011009 -
Vvi7g582 526 MobiDBLite consensus disorder prediction 477 526 - -
Vvi7g582 526 ProSiteProfiles Protein kinase domain profile. 120 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g582 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 275 - -
Vvi7g582 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 282 496 - -
Vvi7g582 526 CDD STKc_NDR_like 118 458 - -
Vvi7g582 526 SMART pkinase_C_6 395 459 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi7g582 526 Pfam Protein kinase domain 121 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g582 526 MobiDBLite consensus disorder prediction 9 37 - -
Vvi7g582 526 SMART serkin_6 120 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g582 526 Pfam Protein kinase C terminal domain 413 457 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi7g582 526 Gene3D Phosphorylase Kinase; domain 1 91 423 - -
Vvi7g582 526 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Vvi7g582 526 Gene3D Transferase(Phosphotransferase) domain 1 204 414 - -
Vvi7g582 526 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 467 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g722 Vvi7g582 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76754 PF00069 Pkinase 2.40E-67 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g582 K08790 - vvi:100258384 1038.1