Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g594 ATGATTCCTTTGTCTGAAATCCTTGCAACCAACGATTATTCAGCAAGTGGCAGTTCTTCTCGAGCTGCTGAGCTTGAGCAGAAGCAAGATATCGGTAATATTGAAGAAGCTGAATCATCTCTCCGTGAGAGTGGTTGTTTAAACTACGAGGAAGCAAGAGCATTGTTAGGGAGATACGAATATCAAAAAGGGAACATAGAAGCTGCTCTGCATGTATTTGAAGGAATAGATATTGCTGCAGTGACTCCCAAGATGAAACTCACCCTCGCTAAGAGAGGAGAACGTCGTAGGAGACGCTCTCAAAGTGATGCTGCCCCACCTATGTCCATACATGCTGTTAGTTTACTCTTGGAAGCAATCTTTCTTAAAGCAAAGTCATTGCAGGGTCTTGGAAGGTTTAAAGAAGCTGCTCAATCATGCAACGTTATTCTGGACATTGTTGAATCTTCATTACCAGAAGGCTTGCATGTAAACTTTGGTTCTGACTGTAAATTGCAGGAGACTTTAAATAAGGCCATTGAGTTGCTTCCAGAATTATGGAAACTTGCTGATTCTCCTCATGAAGCAATTTTGTCATACCGACGAGCCCTTCTACATGCTTGGAACATTGATGTGGAAACTAATGCAAAAATCCAAAAAGAGTTTGCTATTTTTCTTCTATACAGTGGAGGTGAAGCAAGCCCCCCGGAGCTCCGTTCCCAAATGGATAGTTCATTTGTACCTAGAAACAACATAGAAGAGGCTATTCTTCTATTAATAATTCTATTAAGAAAAATTTCTCTTGAAAAAATTGAGTGGGACCCATCAATCTTGGATCACCTCTCCTATGCTCTGTCTCTGTCAGGGGGACTAAGGGCTTTAGCCAATCAAGTAGAAGAATTGCTTCCTGGGACCATGAATCGAAAAGAAAGGTATCACACTCTAGCACTCTGTTATTATGGAGATGGTGATAGCTTGACTGCTTTGAATTTGTTGAAGAAACTATTGAGTAATGCGGAGAATCCAAACTATCTTCCAGCTTTATTAATGGCTTCAAAGATTTGTGGGGAAAACCCAAATTTTGCAGAAGAAGGGATCAGCTTTGCCCGCAGAGCCCTGCAAAGCTTGCAGGGAGGGTGTGAAGAGATGGGAAGTGTTGCCAACTGTTTATTGGGTATTTCACTTTCTGCACATTCCAAATCAGTTGTGGCTGACTCTGAGAGGGTTTCAAGACAAGCTGAGGCACTTCATGCCCTGGAAACAGCTGGGCGAATGATTAAAGTAAGAGATCCCAAAGTTGTTTACCATCTCAGCCTAGAAAATGCTGAGCAGAGGAAGTTGGATGCTGCACTTTATTATGCAAAGTACTTCATAAAACTTGAAGGTGGGTCTTCAGTTAAAGGATGGTTATTGTTGACTCGGATATTATCAGCTCAAAAACGGTTCAAGGATGCTGAAGCTGTCATTAATGCTGCCATTGATCAGACTGGCAAATGGGATCAGGGAGAATTGTTAAGAACTAAAGCTAAACTCCAAATTGCACGTGGACGGTTAAAGCAAGCAGTTGAGACATATACTCATCTTCTTGCTGTTCTTCAGGTTCAGAGAAAAAGCTTTGGGTCTGGGAATAAGTTTCTCAAGGGCAGTGGATATCCTGATAGAAGTTTGGAATTGGATGCATGGCATGATCTGGCTTATTTATACATAAGCTTGTCACGGTGGCATGAGGCTGAGATCTGTCTTTCCAAATCCCGGGCCATCAGTCCTTATTCTGCTGCTAGATGTCATGCAATGGGTTTACTTTATGAAAAGCAAGGCCTCCACAAAGAAGCTCTAAAAGCCTTTGCAAATGGTTTAGATATTGAACCCACCCACATACCCTGCCTGATCTCCATTGCCGTGGTTCTCAGGCACCTCGGCACCCAATCAGATGCAGTTGTTAGAAGCTTTCTGACACAAGCACTGCAGCTTGACAGAATGAACCCTTCTGCATGGTATAATCTTGGCCTGGTTTACAAAGCCCAGGGTGCTGCATCATTACAAGAAGCTGCTGAATGTTTCGAGGCTGCAGCCCTTCTTGAAGAGTCGACACCAGTTGAGCCCTTCAGATGA 2091 42.9 MIPLSEILATNDYSASGSSSRAAELEQKQDIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDIAAVTPKMKLTLAKRGERRRRRSQSDAAPPMSIHAVSLLLEAIFLKAKSLQGLGRFKEAAQSCNVILDIVESSLPEGLHVNFGSDCKLQETLNKAIELLPELWKLADSPHEAILSYRRALLHAWNIDVETNAKIQKEFAIFLLYSGGEASPPELRSQMDSSFVPRNNIEEAILLLIILLRKISLEKIEWDPSILDHLSYALSLSGGLRALANQVEELLPGTMNRKERYHTLALCYYGDGDSLTALNLLKKLLSNAENPNYLPALLMASKICGENPNFAEEGISFARRALQSLQGGCEEMGSVANCLLGISLSAHSKSVVADSERVSRQAEALHALETAGRMIKVRDPKVVYHLSLENAEQRKLDAALYYAKYFIKLEGGSSVKGWLLLTRILSAQKRFKDAEAVINAAIDQTGKWDQGELLRTKAKLQIARGRLKQAVETYTHLLAVLQVQRKSFGSGNKFLKGSGYPDRSLELDAWHDLAYLYISLSRWHEAEICLSKSRAISPYSAARCHAMGLLYEKQGLHKEALKAFANGLDIEPTHIPCLISIAVVLRHLGTQSDAVVRSFLTQALQLDRMNPSAWYNLGLVYKAQGAASLQEAAECFEAAALLEESTPVEPFR* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6831920 6838410 + Vvi7g594 Vvi7g594 789460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g594 696 Gene3D Tetratricopeptide repeat domain 548 640 IPR011990 GO:0005515
Vvi7g594 696 Pfam Tetratricopeptide repeat 587 618 IPR019734 GO:0005515
Vvi7g594 696 Gene3D Tetratricopeptide repeat domain 4 547 IPR011990 GO:0005515
Vvi7g594 696 ProSiteProfiles TPR repeat profile. 585 618 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 459 492 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 585 618 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 551 584 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 495 528 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 302 335 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 117 150 IPR019734 GO:0005515
Vvi7g594 696 SMART tpr_5 655 690 IPR019734 GO:0005515
Vvi7g594 696 Pfam TPR repeat 646 669 - -
Vvi7g594 696 PANTHER PROTEIN NPGR2 1 696 - -
Vvi7g594 696 PANTHER PROTEIN NPG1 1 696 IPR043376 -
Vvi7g594 696 SUPERFAMILY TPR-like 118 524 IPR011990 GO:0005515
Vvi7g594 696 Gene3D Tetratricopeptide repeat domain 641 694 IPR011990 GO:0005515
Vvi7g594 696 SUPERFAMILY TPR-like 497 686 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g747 Vvi7g594 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g594 K21843 - vvi:100258327 1309.28