Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g614 ATGGCAGGCCTTGTTGCAGGTTCCCATACCCGAAATGAGATGCATGTTTTGCATGGCGAGCAACGGCCTCCCACCCGCCAGTCTGTACCCAAACTATGTCGTGTTTGTGGCGATGAGATCGGAGTTAAAGCGGATGGTGAGTTGTTTGTAGCCTGCCATGAGTGTGGGTTCCCAGTTTGCAAGCCTTGTTATGAGTATGAAAGGAGTGAAGGAAACCAGTGCTGTCCCCAGTGTAACACTCGCTATAAGCGTCACAAAGGTTGCGCTAGAGTTGCAGGAGATGATGAAGGCAGCTTGGATGGAGATGATTTCAATGATGAATTTCAGATTAAGAACACGCGAGATCAGCAGAATGTCTTTGCTCCTTCGGAAAATGGAGACTATAATCCGCAGCAATGGCATGCAAATGGCCAAGCCTTCTCTGCAGCAGGGAGTGTTGCTGGAAAGGATTTTGAAGGTGAGAAAGATATTTACAACAATGATGAATGGAAAGACAGGGTAGAGAAATGGAAAACCAGGCAAGAAAAGAAAGGTTTAATTAGCAAAGATGGAGGAAATGATCCAGGCGATGATGATGACTTCCTTCTGGCTGAGGCCCGGCAACCATTGTGGAGAAAAGTCCCAATCGCATCAAGCAAAATCAGCCCATATCGCATAGTCATCGTCCTCCGTCTAGTCATTCTTGCTTTCTTCTTCCGTTTCCGCATCTTAACCCCAGCTTATGATGCTTTTCCCTTGTGGCTCATCTCTGTCATTTGTGAGATCTGGTTCGCTTTCTCTTGGATACTTGACCAGTTCCCCAAATGGCAACCCATCAACCGTGAAACCTACCTGGAACGCCTGTCAATGAGGTTTGAGCGTGAGGGTGAGCCCAACCGTCTCTCCCCAGTTGATGTCTTTGTAAGTACTGTGGACCCTCTTAAGGAACCACCAATCATAACTGCAAACACAGTTCTATCCATCTTGTCCCTTGATTATCCGGTCGAGAAGGTGAGTTGTTATGTATCGGATGATGGCGCATCCATGCTTCTTTTCGATTCTCTAGCAGAAACTGCTGAGTTTGCAAGGAGATGGGTGCCATTCTGCAAGAAGCATAGCATTGAGCCCAGGGCTCCTGAGTTCTACTTCTCTCAGAAAATTGACTACTTGAAAGATAAAGTGGACCCCAGCTTTGTGAAGGAGCGCAGAGCCATGAAAAGAGAGTATGAAGAGTTCAAAGTGAGGATTAACGCATTGGTAGCAAAGGCTCAAAAGAAACCAGAAGAAGGATGGACCATGCAGGATGGCACCCCATGGCCTGGAAACATCACTCGCGATCATCCCGGGATGATTCAGGTTTACCTTGGTAGTGAAGGTGCACTTGATGTAGAAGGTAAGGAGCTGCCACGGCTCGTGTATGTTTCTCGTGAGAAACGACCTGGCTATCAGCACCACAAGAAAGCTGGTGCCATGAATGCTCTGATTCGAGTCTCTGCAGTGCTTACCAATGCACCCTTTATGTTGAATTTGGATTGTGATCACTACATCAACAACAGCAAGGCTGCAAGAGAAGCCATGTGCTTTCTGATGGATCCACAGCTTGGGAAGAAGCTCTGTTATGTCCAGTTCCCACAGAGGTTCGATGGTATTGATCTCCACGATCGATATGCTAACCGAAATGTTGTATTCTTTGATATCAACATGAAAGGCCTAGATGGGATTCAAGGGCCGGTGTATGTTGGTACTGGATGTGTCTTCAACCGGCAGGCATTGTATGGCTATGATCCACCATCAAAGTCGAAGAAGAAAAAGAAAATGATGGGGAAGAACTACTCCAGGAAAGGATCTGGACCAGTCTTTGATCTTGAAGAGATTGAAGAAGGCCTTGAAGGCTATGATGAGTTGGAGAAATCATCCCTTATGTCACAGAAAAACTTTGAGAAACGGTTTGGACAGTCTCCAGTTTTCATTACTTCCACTCTCATGGAAGATGGTGGCCTTCCTGAAGGGACTAATAGCACAGCTCTTATCAAAGAAGCCATCCATGTTATCAGTTGCGGCTATGAAGAAAAAACCGAATGGGGCAAAGAGATTGGATGGATTTATGGTTCAGTTACAGAAGACATTTTGACAGGATTCAAGATGCATTGTAGAGGGTGGAAGTCAGTGTATTGTATGCCAAAGAGAGCGGCTTTCAAGGGATCTGCTCCTATAAATCTATCAGACCGGTTGCACCAAGTTTTGAGATGGGCTCTTGGATCTGTTGAAATTTTCCTTAGTCGTCACTGTCCTCTATGGTATGGTTATGGAGGAAAGTTGAAATGGCTGGAGAGGCTTGCTTACATTAACACCATTGTTTATCCCTTCACTTCCATTCCCTTGCTTGCCTACTGTACCATTCCTGCAGTCTGTCTTCTCACAGGAAAATTCATCATCCCAACTCTGACAAACTTTGCTAGCGTATGGTTTATGGCTCTTTTCCTCTCCATCATAGTAACAGGTGTGCTTGAGCTCCGATGGAGTGGTGTTAGCATCCAGGACTGGTGGCGCAATGAACAATTCTGGGTGATTGGTGGTGTCTCAGCTCACCTTTTCGCCGTTTTCCAGGGCCTCCTCAAGGTTCTTGCTGGAGTTGATACCAACTTCACTGTAACATCAAAAGCAGCAGATGATGCTGAGTTTGGAGACCTCTACCTCTTCAAATGGACTACCCTTCTCATCCCACCAACCACTCTTATAATCCTGAATATGGTTGGAGTTGTAGCTGGAGTTTCAGATGCCATCAACAATGGTTATGGTTCATGGGGACCTTTATTTGGGAAACTATTTTTTGCCTTCTGGGTCATTGTCCATCTCTATCCATTCCTCAAGGGTTTGATGGGAAGGCAAAACAGAACTCCTACCATTGTAGTCCTTTGGTCCATCCTTCTCGCTTCGATTTTCTCACTGGTTTGGGTTCGAATTGATCCTTTCCTGCCTAAACAAACAGGCCCAGTTCTTAAACAATGTGGTGTCGAATGCTAG 3003 45.85 MAGLVAGSHTRNEMHVLHGEQRPPTRQSVPKLCRVCGDEIGVKADGELFVACHECGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCARVAGDDEGSLDGDDFNDEFQIKNTRDQQNVFAPSENGDYNPQQWHANGQAFSAAGSVAGKDFEGEKDIYNNDEWKDRVEKWKTRQEKKGLISKDGGNDPGDDDDFLLAEARQPLWRKVPIASSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFAFSWILDQFPKWQPINRETYLERLSMRFEREGEPNRLSPVDVFVSTVDPLKEPPIITANTVLSILSLDYPVEKVSCYVSDDGASMLLFDSLAETAEFARRWVPFCKKHSIEPRAPEFYFSQKIDYLKDKVDPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWTMQDGTPWPGNITRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQLGKKLCYVQFPQRFDGIDLHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPSKSKKKKKMMGKNYSRKGSGPVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFITSTLMEDGGLPEGTNSTALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNFASVWFMALFLSIIVTGVLELRWSGVSIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTSKAADDAEFGDLYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPVLKQCGVEC* 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7204657 7209262 - Vvi7g614 Vvi7g614 789480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g614 1000 Coils Coil 395 415 - -
Vvi7g614 1000 SUPERFAMILY RING/U-box 19 98 - -
Vvi7g614 1000 CDD mRING-HC-C4C4_CesA_plant 31 81 - -
Vvi7g614 1000 Pfam Zinc-binding RING-finger 24 96 IPR027934 -
Vvi7g614 1000 Pfam Cellulose synthase 297 993 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi7g614 1000 SUPERFAMILY Nucleotide-diphospho-sugar transferases 310 822 IPR029044 -
Vvi7g614 1000 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 107 IPR013083 -
Vvi7g614 1000 MobiDBLite consensus disorder prediction 1 23 - -
Vvi7g614 1000 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 438 588 IPR029044 -
Vvi7g614 1000 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 21 119 - -
Vvi7g614 1000 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 153 1000 - -
Vvi7g614 1000 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 153 1000 - -
Vvi7g614 1000 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 119 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g614 K10999 - gmx:100781996 1737.62