Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g615 ATGCATGCTAGTCCTTTACCCTCCAACAGCGGTGCAGTTGGTCATATTTTTTCATCATCCTCAGGATACTCCACAGACCTTCATTTCTCATCTGTTTCACCCCATGAAAGGCATTCAAGAAGACAGCTTCAGTCTACAGCATCAAGTCATTACATTGAAGAAAATAACAATGCTTCCTGGTGTACAGATTCACTATCCGGTTTTCTTGATTTTCCTGTAAACACCCCTGTCCAGAGTAGTCAAATAGAAAGTAGGAGTGCAAGTGGTGTCATTGCATCTGAGGACCTTAGCAAACGGCATGATTGGCAAGAATGGGCAGACCAGCTAATCACTGATGATGATGCTCTGAATTCGAATTGGAATGAGTTCCTTGTTGACACCAATGTTGCAGATGTAGAACCAAAGATGGCTTACCAAGTGCCTAAACCATCATCAAACTTCTCAGCAAACCAGCCCCAGGTTCATCCACAGCTTTCTGCTCCATCTGGAGAAGTTCACAATGTTGTTACTCCCTCATCGTCAGTAAACACTGCTCCAACCAAGCCACGGATGCGTTGGACACCAGAACTTCATGAGGCTTTTGTGGAGGCAGTCAACCAACTTGGTGGTAGTGAAAGAGCTACTCCTAAGGGTGTACTGAAGCTCATGAAAGTGGAAGGCTTAACCATCTATCATGTAAAAAGCCACTTGCAGAAATATAGAACAGCGAGATACAGACCAGAGTCATCGGAAGGATCCTCTGAGAAAAGATTGACATCCATCGAAGAAATGTCGTCTCTGGACTTGAAAACAGGTATTGAGATCACTGAAGCCCTGCGATTACAGATGGAAGTTCAGAAGAGGCTGCACGAACAACTTGAGATACAAAGAAATTTACAGCTGCGAATAGAAGAACAAGGGAGATACCTCCAAATGATGTTTGAGAAGCAATGCAAATCAGGAATTGACAAGCTGAAGACATCATCATCTGCACTGGAAAACCCCTCTTCTTTATCATCAGATACCATACCAAATTCCCCTGCTAAAAGTGAAATGGAAGCATCCCATGATGAGCATGACAAAACAGGAACCGACCTAGTTAATGACAGCAAAACATCAAGCGGAAATCCCCAAAAACTGAGCAGGGAGCAAAATGCAATTGAAACTGAAGCTCTTCTGGGTAGCGAGCAAATTGCAATTGAACCTGAAGCTCCTAGGAATGTTGAACAAGATGCTGCTTGTGAATCTAATTCCCAACCCTCGAAGCGTGCAAAAGTGGATGAGTCATCCATATCATCTGTCAAATCAGCATCGAGCTGA 1299 43.65 MHASPLPSNSGAVGHIFSSSSGYSTDLHFSSVSPHERHSRRQLQSTASSHYIEENNNASWCTDSLSGFLDFPVNTPVQSSQIESRSASGVIASEDLSKRHDWQEWADQLITDDDALNSNWNEFLVDTNVADVEPKMAYQVPKPSSNFSANQPQVHPQLSAPSGEVHNVVTPSSSVNTAPTKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKRLTSIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIDKLKTSSSALENPSSLSSDTIPNSPAKSEMEASHDEHDKTGTDLVNDSKTSSGNPQKLSREQNAIETEALLGSEQIAIEPEAPRNVEQDAACESNSQPSKRAKVDESSISSVKSASS* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7210985 7220524 - Vvi7g615 Vvi7g615 789481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g615 432 MobiDBLite consensus disorder prediction 319 432 - -
Vvi7g615 432 Pfam Myb-like DNA-binding domain 183 234 IPR001005 -
Vvi7g615 432 SUPERFAMILY Homeodomain-like 179 235 IPR009057 -
Vvi7g615 432 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 181 235 IPR006447 GO:0003677
Vvi7g615 432 MobiDBLite consensus disorder prediction 344 359 - -
Vvi7g615 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 238 IPR017930 -
Vvi7g615 432 MobiDBLite consensus disorder prediction 360 384 - -
Vvi7g615 432 MobiDBLite consensus disorder prediction 404 432 - -
Vvi7g615 432 Gene3D - 180 239 - -
Vvi7g615 432 Coils Coil 269 289 - -
Vvi7g615 432 Pfam MYB-CC type transfactor, LHEQLE motif 266 313 IPR025756 -
Vvi7g615 432 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 2 384 IPR044848 GO:0003700
Vvi7g615 432 MobiDBLite consensus disorder prediction 319 342 - -
Vvi7g615 432 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 2 384 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15059 PF00249 Myb_DNA-binding 7.80E-09 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g615 - - vvi:100244545 816.224