Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g671 ATGGCCATGGCTCTTGTCGTCGGAGCTTTAGGTCAAATTGGAGGCCACCTCGATGCATGGGGCGACGGACGTGCAACATTTTATGGTGATATTCATGGGAGTGAAACCATGTATGGAGCATGTGGCTATGGAAATTTATTTGAACAAGGGTATGGTCTCGAGACAACTGCGCTAAGCACAGCGCTGTTCAACAACGGGGCGACATGTGGAGCCTGTTTTGAGCTATATTGTGTGCACTCAAAATGGTGCATAAAGGGGGCCGGAGGCATTCGAGTGACAGCAACAAATTTTTGCCCGCCTAGCTCTACATCCCCAAACCCCTGGTGCAATCCACCACAAAAGCACTTCGATTTGTCGCAATACATGTTTCTAAAGTTCGCCATATACCAAGGCGGAGTCGTGCCCGTGAAGTTCCGGAGGGTGTATTGTTACAAGAAGGGAGGAATGAAGTTCGAGATCAAAGGAAACCCATATTGGATTCTTGTGTTGGTGTACAATGTGGGAGGTCTGGGGGATGTTTCTAATGTGAAGGTCAAGGGTTCAAGGACTGACTGGATACAGATGCAACGGAATTGGGGCCAGAATTGGGAAACGGGGGTTCAATTGGTAGGCCAAGGCCTATCTTTTCAGGTGACTACTAGTGATGGTAGGATGGTGCAGTCGGATAATATTGTCCCAACCAATTGGGAGTTTGGTCAAACATTTGAGGGGCGAAATTTTTGA 723 47.99 MAMALVVGALGQIGGHLDAWGDGRATFYGDIHGSETMYGACGYGNLFEQGYGLETTALSTALFNNGATCGACFELYCVHSKWCIKGAGGIRVTATNFCPPSSTSPNPWCNPPQKHFDLSQYMFLKFAIYQGGVVPVKFRRVYCYKKGGMKFEIKGNPYWILVLVYNVGGLGDVSNVKVKGSRTDWIQMQRNWGQNWETGVQLVGQGLSFQVTTSDGRMVQSDNIVPTNWEFGQTFEGRNF* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8110140 8111055 - Vvi7g671 Vvi7g671 789537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g671 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Vvi7g671 240 Gene3D - 147 240 IPR036749 -
Vvi7g671 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 148 IPR007112 -
Vvi7g671 240 PANTHER EXPANSIN-A21-RELATED 18 240 - -
Vvi7g671 240 SMART dpbb_1 55 138 IPR007112 -
Vvi7g671 240 Pfam Expansin C-terminal domain 150 226 IPR007117 -
Vvi7g671 240 Pfam Lytic transglycolase 55 138 IPR009009 -
Vvi7g671 240 Gene3D - 12 143 IPR036908 -
Vvi7g671 240 PANTHER EXPANSIN-A15 18 240 IPR002963 GO:0009664
Vvi7g671 240 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
Vvi7g671 240 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 76 87 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Vvi7g671 240 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Vvi7g671 240 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Vvi7g671 240 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Vvi7g671 240 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Vvi7g671 240 PRINTS Expansin/Lol pI family signature 19 34 IPR007118 GO:0005576
Vvi7g671 240 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Vvi7g671 240 SUPERFAMILY Barwin-like endoglucanases 19 166 IPR036908 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g671 - - vvi:100246415 518.464