Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g705 ATGGAGCTTCAACTTTTCTTCTTCGTCTTCTTCTTCTTTTTCTTCATAGTTTCATCCATCTCTCTCATTGATTCCCCTTCTTCTTCTTCTTCTTCTTCTTCGGATGTTGAGCTTTTGTTGAACAAGATCAAGCCTTCGCTTCAAGGCAGCTACTCGGATAATCTCCTTCTATCTTCGTGGAACACCTCTGTGCCACTCTGCCAATGGCGGGGCCTTAAGTGGGTCTTCTCCAACGGCTCTCCTCTCCTCTGCACTGACCTGTCCTCTCCTCACTGGACCAACCTCTCTCTCTCCAAAGACCCTTCTCTCCACCTTCTTTCTCTTCAGCTCCCTTCTGCTAATCTTACTGGCTCACTTCCCAAGGAGCTCGGGGAGCTTTCTGCGCTCCAGAGCCTCTACCTCAATGTCAACTCGCTCACTGGGACTATCCCTTTGGAGCTCGGTTACAGCCCTTCTCTCTCCGACCTCGATTTGGGGAATAATCAGTTGAGTGGAGCTCTCACCCCGGCGATTTGGAACCTTTGTGACCGGCTCGTTTCTCTGAGGCTTCACGCCAATCGGCTATCTGGGTCTGTGCCAGAACCTGTTTTACCCAACTCCACTTGCAATAATTTGCAGTTTCTTGATTTGGGTGACAACCAGTTTTCCGGGTCGTTTCCGGAGTTTGTCACCAGGTTTGATGGCCTCAAAGAGCTTGATCTTGGGAACAATTTGTTTTCTGGATCGATTCCGGAGGGTTTGGCCAAGTTGAATCTTGAGAAATTGAACCTTTCGTACAATAATTTTAGTGGAGTGTTGCCAGTTTTTGGTGAATCCAAGTATGGAGTGGAGGTCTTTGAAGGGAACAATGCTGGGCTTTGTGGGTCTCCTCTGAGGAATGACGAAAATGGCAGTGGAGGAAGTGGAGATGGGAAGCTTATACTGTTTCAGGGAGGCGAGCATTTGACACTGGAGGACGTGTTGAATGCAACGGGGCAAGTGATGGAGAAGACGAGCTACGGGACAGTGTATAAAGCAAAGCTTGCAGATGGAGGGAGCATTGCGTTGAGGCTACTGAGGGAAGGCAGTTGTAAGGATAGTAATTCGTGTTTGCCGGTGATAAAGCAATTGGGAAGGGTTAGGCATGAGAATTTGATTCCATTGAGAGCTTTCTATCAGGGGAAAAGAGGGGAGAAGCTTCTCATCTATGACTATCTGCCCAACAGATCCCTCCATGACCTCTTGCATGAGACTAGAGCAGGAAAACCAGTGCTGAACTGGGCTCGGCGACACAAGATTGCATTGGGTATAGCCAGGGGGCTAGCATTTCTTCATACAGTTGAAGCACCTATTACTCATGGGAATGTGAGATCCAAGAATGTACTTATAGACGAATTTTTTGTGGCCAGGCTTACTGAGTTTGGGCTTGACAAAGTAATGGTTCCAGCTGTAGCAGATGAAATGGTGGCACTTGCAAAAACTGATGGTTACAAGGCACCAGAGCTTCAAAAGATGAAGAAATGCAATTCCAGGACAGATGTTTATGCATTTGGGATACTGTTGTTGGAGATATTGATAGGAAAGAAGCCTGGGAAAAATGGAAGAAGTGGTGATTTCGTGGATTTGCCCTCAATGGTCAAAGTGGCCGTTCTAGAGGAGACCACCATGGAGGTTTTCGATGTGGAAGTTTTGAAGGGAATAAGGAGTCCAATGGAGGAAGGGTTGGTTCAACCCCAGTGA 1719 47.41 MELQLFFFVFFFFFFIVSSISLIDSPSSSSSSSSDVELLLNKIKPSLQGSYSDNLLLSSWNTSVPLCQWRGLKWVFSNGSPLLCTDLSSPHWTNLSLSKDPSLHLLSLQLPSANLTGSLPKELGELSALQSLYLNVNSLTGTIPLELGYSPSLSDLDLGNNQLSGALTPAIWNLCDRLVSLRLHANRLSGSVPEPVLPNSTCNNLQFLDLGDNQFSGSFPEFVTRFDGLKELDLGNNLFSGSIPEGLAKLNLEKLNLSYNNFSGVLPVFGESKYGVEVFEGNNAGLCGSPLRNDENGSGGSGDGKLILFQGGEHLTLEDVLNATGQVMEKTSYGTVYKAKLADGGSIALRLLREGSCKDSNSCLPVIKQLGRVRHENLIPLRAFYQGKRGEKLLIYDYLPNRSLHDLLHETRAGKPVLNWARRHKIALGIARGLAFLHTVEAPITHGNVRSKNVLIDEFFVARLTEFGLDKVMVPAVADEMVALAKTDGYKAPELQKMKKCNSRTDVYAFGILLLEILIGKKPGKNGRSGDFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEEGLVQPQ* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9539483 9543379 + Vvi7g705 Vvi7g705 789571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g705 572 Pfam Leucine rich repeat 204 262 IPR001611 GO:0005515
Vvi7g705 572 Gene3D Transferase(Phosphotransferase) domain 1 399 569 - -
Vvi7g705 572 ProSiteProfiles Protein kinase domain profile. 322 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi7g705 572 Pfam Protein tyrosine and serine/threonine kinase 326 528 IPR001245 GO:0004672|GO:0006468
Vvi7g705 572 SUPERFAMILY Protein kinase-like (PK-like) 327 532 IPR011009 -
Vvi7g705 572 Gene3D Ribonuclease Inhibitor 37 176 IPR032675 -
Vvi7g705 572 Gene3D Ribonuclease Inhibitor 178 295 IPR032675 -
Vvi7g705 572 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 2 298 - -
Vvi7g705 572 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 299 570 - -
Vvi7g705 572 SUPERFAMILY L domain-like 65 269 - -
Vvi7g705 572 Gene3D Phosphorylase Kinase; domain 1 306 398 - -
Vvi7g705 572 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 298 - -
Vvi7g705 572 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 299 570 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76766 PF07714 PK_Tyr_Ser-Thr 1.00E-24 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g705 - - vvi:100254567 1013.83