Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g706 ATGGCTGTCTCTCTGAGGTGGTTCTCGCTTTGCTCGTTGTTGGTGTTGGTGCTGTTCCTCCGCGTCAACGCCGACGAGCTTCAGAAATTGAGGGTTGAAGAAAAGCCGGACCAGTTGCAGAGCTTGGAGAACTCCACAATGGCGGAGAGGTTGGATAAAAGTGAAGGGTGGAATGAGCGGAATGAGCACGCCGTGGAAAATCCAGAGGAGGTTGCTTCCATGGTTGATATGAGCATCCGTAATAGTACGGAAAGGAGGAACCTGGGTTATTTCTCATGTGGAACTGGAAATCCCATTGATGACTGCTGGCGCTGTGACCCACATTGGCAACTTCACCGCAAGCGCCTTGCTGACTGTGGCATTGGCTTTGGACGCAATGCCATTGGTGGCCGGGATGGACGGTACTATGTGGTGACAGACCCTGGTGATTACGACGCTGTCAATCCCCGACCTGGCACTCTTCGCCATGCTGTCATCCAGGACAAGCCTTTATGGATCGTGTTCAAGCGGGACATGGTGATTAAACTGAAGCAAGAGCTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGAGTGAATGTCCACATCGCCAATGGGGCGTGCATCACCATCCAGTTTATCACCAATGTCATTATCCATGGTCTCAATATTCATGATTGCAAGCCCACTGGCAACGCCATGGTCCGAAGCTCACCTAGCCATTATGGATGGAGGACAATGGCCGATGGTGATGGCATTTCAATTTTTGGCTCCAGCCACATCTGGATTGATCACAACTCCCTCTCCAACTGCGCCGATGGCCTTATTGACGCTGTGATGGGATCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAATGAGGTGATGCTATTGGGTCACAGTGACTCTTACACAAGAGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTCGGCGAGGGACTTATCCAGAGAATGCCAAGGTGTAGGCATGGTTATTTCCATGTGGTAAACAACGACTATACCCACTGGGAAATGTATGCTATTGGTGGAAGTGCTGAGCCCACCATTAACAGCCAGGGCAACAGATATCTTGCCCCTGCCAACCCCTTTGCTAAAGAGGTGACAAAGAGGGTGATCACCTCTAACAGTGTGTGGAAGCACTGGAATTGGAGATCAGAGGGAGACCTTTTGCTAAATGGGGCCTACTTCACTCCATCCGGAGCTGGGGCTGCAGCCAGCTACGCCAGAGCTTCAAGCTTAGGAGCCAAGTCCTCTTCCATGGTGGGCACCATCACATCCGGTGCCGGTGCTCTCTCCTGCCGCAGAGGCCGCCAATGCTGA 1338 51.49 MAVSLRWFSLCSLLVLVLFLRVNADELQKLRVEEKPDQLQSLENSTMAERLDKSEGWNERNEHAVENPEEVASMVDMSIRNSTERRNLGYFSCGTGNPIDDCWRCDPHWQLHRKRLADCGIGFGRNAIGGRDGRYYVVTDPGDYDAVNPRPGTLRHAVIQDKPLWIVFKRDMVIKLKQELIMNSFKTIDARGVNVHIANGACITIQFITNVIIHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPANPFAKEVTKRVITSNSVWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSMVGTITSGAGALSCRRGRQC* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9546234 9551518 - Vvi7g706 Vvi7g706 789572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g706 445 PANTHER PECTATE LYASE 11 442 - -
Vvi7g706 445 SMART amb_all 171 368 IPR002022 -
Vvi7g706 445 Gene3D - 96 438 IPR012334 -
Vvi7g706 445 MobiDBLite consensus disorder prediction 38 67 - -
Vvi7g706 445 Pfam Pectate lyase 182 360 IPR002022 -
Vvi7g706 445 PANTHER PECTATE LYASE 18-RELATED 11 442 IPR045032 GO:0030570
Vvi7g706 445 MobiDBLite consensus disorder prediction 48 67 - -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Vvi7g706 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Vvi7g706 445 SUPERFAMILY Pectin lyase-like 73 439 IPR011050 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g845 Vvi7g706 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g706 K01728 - vvi:100251082 906.36