Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g809 ATGAAAGGGACTAGCAATGGTGGTGAAAACCAGCTCGTGTCGACGTCGCTATACGTCGGTGGCCTAGAATCAAACGTCACCGACTCGCATCTCTTTGATTTGTTTGGTCAACTGGGTCCGGTGGTTTCCGTTCAGATTTGCTGCGACTTGAGCACTCGAAGATCACTCAATTATGGTTGTGTTAATCATGGCAATCCCCAAGACACCGTAAGGGCATTGGATGTGTTGAATTTCACTCATCTCAATGGAAAGCCAACTAGGATTATGTATTCCCATTGTGACCCTAGTGTCCGCAAAAGTGGAACTAGGAATATATTTATTAAGAATTTGGATAAAAGGGTTGACCACAAAGCATTGCGTGACACTTTTTCCACATTCGGTAACATCTTCTCATGTAAGGTAGCCGCTGATGCATCTGGATCATATAGTGGGCTGTGA 438 44.52 MKGTSNGGENQLVSTSLYVGGLESNVTDSHLFDLFGQLGPVVSVQICCDLSTRRSLNYGCVNHGNPQDTVRALDVLNFTHLNGKPTRIMYSHCDPSVRKSGTRNIFIKNLDKRVDHKALRDTFSTFGNIFSCKVAADASGSYSGL* 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13335858 13336296 + Vvi7g809 Vvi7g809 789675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g809 145 CDD RRM1_I_PABPs 16 95 - -
Vvi7g809 145 SUPERFAMILY RNA-binding domain, RBD 14 137 IPR035979 GO:0003676
Vvi7g809 145 PANTHER RNA BINDING PROTEIN 8 142 - -
Vvi7g809 145 Gene3D - 3 93 IPR012677 -
Vvi7g809 145 Gene3D - 94 144 IPR012677 -
Vvi7g809 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Vvi7g809 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 140 IPR000504 GO:0003723
Vvi7g809 145 PANTHER POLYADENYLATE-BINDING PROTEIN 2 8 142 - -
Vvi7g809 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 93 IPR000504 GO:0003723
Vvi7g809 145 SMART rrm1_1 16 89 IPR000504 GO:0003723
Vvi7g809 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 145 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g809 K13126 - vvi:100262903 221.09