Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g861 | ATGTCTTCGTCTAATTCTCCGTGTGCGGCGTGCAAGATTCGCCGGCAAAAGTGTACGCAAGAGTGTGTACTCGCACCCTATTTCCCACCAGATCAGCCTCAGAAATTCGTTAATGTCCACAAGGTCTTCGGTGCAAGCAATGTTACAAAGCTTCTCAACGAACTAAATGCTGCAAATCGAGAAGATGCCGTGAATTCCCTGGCTTATGAAGCCGAGGCTCGTCTTCGTGATCCCGTCTATGGCTGTGTTGGTCTGATTTCAGTTCTTCAACAAAGACTTAAGCAAGTTCAGAGTGACCTTTTGGCTGCCAAAAAGGAACTAGCTGCATATATTGGTCCATCAGCGATGTTACCTTTTATCCAACATGTCGAAACAGCAACAAGAGCATCAGCTTCGGCCCCAGCTGCTGCCTCAGACCCAAAAACAACCTCAACAGCAGCAACCACAGTTACCTCAACAGCAGCGAGGAGTTGGAAGCGAGGAGGGCAGAAGCGTGGGCCCCTCTTGTTAAATCTTGCAGCTCATTCTTTTAACAATTTGTCGTTCATGGGTATATTCACTCTCTGTGTCTCTTATTTATGGCTTATGCTTGTGCACATGAAGGTTTCTGAATGCTTGATTCTTGCATTTCTGAACTGTTATAATGCTATGCTTCATGAGTGA | 663 | 46.0 | MSSSNSPCAACKIRRQKCTQECVLAPYFPPDQPQKFVNVHKVFGASNVTKLLNELNAANREDAVNSLAYEAEARLRDPVYGCVGLISVLQQRLKQVQSDLLAAKKELAAYIGPSAMLPFIQHVETATRASASAPAAASDPKTTSTAATTVTSTAARSWKRGGQKRGPLLLNLAAHSFNNLSFMGIFTLCVSYLWLMLVHMKVSECLILAFLNCYNAMLHE* | 221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 14524922 | 14526703 | + | Vvi7g861 | Vvi7g861 | 789727 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g861 | 220 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - | |
| Vvi7g861 | 220 | Coils | Coil | 86 | 106 | - | - | |
| Vvi7g861 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 124 | - | - | |
| Vvi7g861 | 220 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 6-RELATED | 1 | 124 | - | - | |
| Vvi7g861 | 220 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15071 | PF03195 | LOB | 3.00E-40 | No_clan | Vvi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g861 | - | - | vvi:100246034 | 249.98 |