Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g89 ATGCTTATGAGGGCGGGTTGGACAATTGATTATAGGCCTAGGAGGGATAAAGAGTATAATGATGCAGTGTATACAAGTCCTACAGGGCGGGGCTACTGGTCGGTCACCTTGGCTTACAATGTGCTTAAAAGCCACTATGAAGATGGTCATTGTGAGCCTGGTTTTACATTTACTCCAATACCAGATGGGGTTCTCACGAAACTGAAGAGGAATGCTAGTAAGGGAAAGAAGAGAAGATTGAAATTGGAGCAAGAATATGACAGCGGAGGTGAGATGAAATGTTGTATCGTAAAAAAGAAATCTGGAAAAAATAAACATGCTGGAGGGAAAACTCAAAATACAAAACGATTTGCTCTTTTGGCCCGCCACTCTAAGGAAGGGTTGACTACAGATACTGATGGCTATGTACCATATTCTGGGAAACGAACACTGCTTTCCTGGATGGTTGATTTGGGAACTGTGCCACTCAATGCAAAGGTGCAATATATGAACCGAAGAAAAACACGGGCACTGCTTGAGGGTTGGATTTCAAGAGATGGCATTCGCTGTGGTTGCTGTAGTGAAATATTCACAATTTCGAAATTTGAGATTCATGCAGGAATGAAATTGTGCGAACCATCTCAAAATATAATTTTAGAGACTGGGATTTCTCTGTTACAGTGCCAGCTAGATTCATGGAATAAACAAGAGGAGTCTGAAAGAAGTGGGTTCCACCTTGTAGACGTTGGTGCTGATGATCCAAATGATGATACCTGTGGCATATGCGGAGATGGTGGGGACTTGATCTGTTGTGATGGTTGTCCATCAACATTCCACCAAAGCTGCTTGGATATACAAAAGTTCCCTTCAGGTGACTGGCACTGTATATATTGTTCATGCAAGTTTTGTGGAATGTTCAGTGGGAACACAGATCAAATGAACTACAATCTTGATGTAAACGATTCTGCATTACTTACTTGCCAATTGTGTGAGGAAAAATATCATCACATGTGTACTCAGGGAGAAGATTCTATACTTGATGATTCCAGTAGTCCTTCCTTTTGTGGGAAAACATGCCGAGAGCTCTTTGAGCAACTACAGATGCTTCTTGGGGTTAAACATGAATTGGAAGATGGATTTTCATGGACTCTTGTTCAGCGAACTGAGGTTGGCTTTGATATATCCCTTAATGGAATACCTCAGAAGGTTGAATGCAATTCCAAGCTAGCTGTTGCATTGTCTATTATGGATGAGTGCTTTTTGCCTATAGTTGATCAAAGAAGTGGGATCAATTTGATTCATAATGTTCTCTATAATTGTGGTTCAAACTTTAATAGGCTCAATTATAGTGGCTTCTTCACTGCTATTCTTGAGAGGGGGGAGGAGATCATATCTGCTGCATCTATTAGGATCCACGGAAACAAGTTAGCTGAGATGCCATTCATTGGAACTCGCCATATTTATAGGCGCCAAGGGATGTGCCGTCGGCTTCTGAATGCAATTGAATCTGCTCTTCACTCTCTCAATGTTGAGAAATTGGTCATACCTGCTATCTCCGAACTCATGCAAACATGGACTTCAGTTTTTGGTTTCAAGCCTCTTGAAGTGTCAAGCAGAAAAGAAATGAGGAACATGAATATGTTAGTCTTCCATGGTACAGACATGCTACAGAAACCACTATTGAAAGATCAGTCCGCCGAAGAAAGCATGATCCCCAGTGCAGTTTTGGAGTCCAATGAACTTAAGAAGGATCTTGATATTAAGCATGGGGTAGCAAATAATTCTGATAAGACATGTTCCCCTGGGTCTGATTTGAATATTTCCAGCAAGGGTGCCAATCTTTCTCTGGCAATATGCAATGGGCCTGCTGCTGTGGAATCTGGTTCACAGCTTAATGAAGGCTCCTTGAATGATTCATCTGACATCACAAGTGAGACAACCAATTTCCCAGAATCTGCTACTAATGAAAAAAGTCTAGTCCATGATAATCTGGAGGGGAAAAATAGAACTGTCATATGTCCTCAGCCTTCTGCTTGTGATGCTCATGCAGTAAATGCACACTCAGCTACTGAAGGGATTGATAAACATCAAACTGCTGTTGATGATTCTATCATTCTGGCTCCTGCTGAGAGGACTGTTGAATCTGACTCCAAATTGAATCAACAGAGAACATGTGACATGGAAAAAAAACCACTTGGAGTTTCTTGCCTTGGGTCTGAAGCAACTGGCTGTGAGAAAGAAGTTTTTCATGCATGCAAGGAGGACGAACAGCTTCGCAGAGCTTCATCTGAAACCCTAACCATGTCCTTGGTAGCGAACGAGGAATTTCAACACATACTTCGTGTGCTCAACACGAACGTCGATGGGAAACAGAAGATCATGTTTGCTCTGACCTCCATCAAAGGTATTGGCCGCCGTTTCGCTAATATCGTCTGCAAGAAAGCCGATGTCGACATGAACAAGAGAGCTGGCGAGCTCTCAGCTGCAGAGCTTGAGAACCTCATGGTGATTGTTGCCAATCCTCGCCAATTCAAGATCCCCGACTGGTTTCTTAACAGGAAGAAGGATTACAAGGATGGGAGGTATTCTCAGGTTGTTTCCAATGCGTTGGACATGAAGCTGAGGGATGACCTTGAGCGACTGAAGAAGATCAGGAACCATCGTGGTCTCCGCCACTACTGGGGTCTTCGTGTCCGTGGGCAACACACCAAGACAACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGATGA 2739 43.15 MLMRAGWTIDYRPRRDKEYNDAVYTSPTGRGYWSVTLAYNVLKSHYEDGHCEPGFTFTPIPDGVLTKLKRNASKGKKRRLKLEQEYDSGGEMKCCIVKKKSGKNKHAGGKTQNTKRFALLARHSKEGLTTDTDGYVPYSGKRTLLSWMVDLGTVPLNAKVQYMNRRKTRALLEGWISRDGIRCGCCSEIFTISKFEIHAGMKLCEPSQNIILETGISLLQCQLDSWNKQEESERSGFHLVDVGADDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQKFPSGDWHCIYCSCKFCGMFSGNTDQMNYNLDVNDSALLTCQLCEEKYHHMCTQGEDSILDDSSSPSFCGKTCRELFEQLQMLLGVKHELEDGFSWTLVQRTEVGFDISLNGIPQKVECNSKLAVALSIMDECFLPIVDQRSGINLIHNVLYNCGSNFNRLNYSGFFTAILERGEEIISAASIRIHGNKLAEMPFIGTRHIYRRQGMCRRLLNAIESALHSLNVEKLVIPAISELMQTWTSVFGFKPLEVSSRKEMRNMNMLVFHGTDMLQKPLLKDQSAEESMIPSAVLESNELKKDLDIKHGVANNSDKTCSPGSDLNISSKGANLSLAICNGPAAVESGSQLNEGSLNDSSDITSETTNFPESATNEKSLVHDNLEGKNRTVICPQPSACDAHAVNAHSATEGIDKHQTAVDDSIILAPAERTVESDSKLNQQRTCDMEKKPLGVSCLGSEATGCEKEVFHACKEDEQLRRASSETLTMSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELENLMVIVANPRQFKIPDWFLNRKKDYKDGRYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 1096083 1114915 - Vvi7g89 Vvi7g89 788955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g89 912 Coils Coil 65 85 - -
Vvi7g89 912 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 344 IPR013083 -
Vvi7g89 912 Gene3D 30s ribosomal protein s13, domain 2 852 902 IPR027437 -
Vvi7g89 912 MobiDBLite consensus disorder prediction 622 647 - -
Vvi7g89 912 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 440 530 IPR016181 -
Vvi7g89 912 Hamap 30S ribosomal protein S13 [rpsM]. 772 912 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi7g89 912 Pfam Tify domain binding domain 174 223 IPR032308 -
Vvi7g89 912 ProSitePatterns Ribosomal protein S13 signature. 881 894 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi7g89 912 Gene3D - 761 840 - -
Vvi7g89 912 SUPERFAMILY FYVE/PHD zinc finger 242 298 IPR011011 -
Vvi7g89 912 ProSiteProfiles Zinc finger PHD-type profile. 249 294 IPR019787 -
Vvi7g89 912 PANTHER PHD FINGER PROTEIN 12 1 739 IPR042163 GO:0003714|GO:0045892
Vvi7g89 912 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 739 - -
Vvi7g89 912 SUPERFAMILY S13-like H2TH domain 773 912 IPR010979 GO:0003676
Vvi7g89 912 CDD PHD1_AIRE 252 291 - -
Vvi7g89 912 Pfam Ribosomal protein S13/S18 774 902 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi7g89 912 SMART PHD_3 293 353 IPR001965 -
Vvi7g89 912 SMART PHD_3 251 292 IPR001965 -
Vvi7g89 912 ProSiteProfiles Ribosomal protein S13 family profile. 775 905 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi7g89 912 CDD NAT_SF 449 508 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi5g499 Vvi7g89 ECH
Vvi5g496 Vvi7g89 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g89 - - vvi:100853644 1498.03