Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g895 ATGAAGAGACTCGGAAGCTCGGAGTCCTTGGGTGCTTTGATGGCCATCTGCCCAACTACAGATGAACACAGTCCCAGGAACAACCATGTCTACAGTAGGGAATTTCAGACCATGTTCGATGGCCTAGACGAAGAGGGCTGTGTGGAGGAATCCGGGCAGATCGTCGAGAAGAAACGGCGGTTAAGCGTCGACCAAGTGAAGGCCTTGGAGAAGAATTTCGAGGTGGAAAATAAGCTTGAACCCGAGAGAAAGGTGAAGCTAGCCCAGGAGCTTGGGTTGCAGCCAAGGCAAGTAGCCGTTTGGTTCCAAAACCGCCGGGCCCGGTGGAAGACCAAGCAATTGGAGAGAGACTATGGCATCCTCAAGGCCAATTATGAAACTCTCAAGCTCAATTACGACGCCATCCAACACGACAATGAAGCTCTACTCAAAGAGATAAGAGAGCTGAAATCAAAGCTGAACGAAGAGAAGACAGAGAGCAATCTTTCAGTTAAAGAAGAGTTGGTGGTTTCAGAATCCGATGAGAAGGTGAAGGTGATGGAACAAAGCGAAACAGCCATGGTGTTCCCGGACATGAAAGATGGCTCCTCCGATAGCGACTCCAGCGCCATCTTGAACGAAGACAACAGCCCCAATGCCGCCATATCTTCATCTGGGGTTCTTCAGAACAACCACCACCACCACCTTCTCATACCCACTCTCGGGAATACCCAGAAAGCCTATCAACCCCAGTTCGTGAAAATGGAGGAACACAATTTCTTCGGCGCAGACGAGTCCTGCAATTTCTTCTCGGACGATCAACCTCCCACCCTTCCTTGGTACTGCCCCGATCAGTGGACCTAA 843 50.53 MKRLGSSESLGALMAICPTTDEHSPRNNHVYSREFQTMFDGLDEEGCVEESGQIVEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGILKANYETLKLNYDAIQHDNEALLKEIRELKSKLNEEKTESNLSVKEELVVSESDEKVKVMEQSETAMVFPDMKDGSSDSDSSAILNEDNSPNAAISSSGVLQNNHHHHLLIPTLGNTQKAYQPQFVKMEEHNFFGADESCNFFSDDQPPTLPWYCPDQWT* 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14952293 14954822 - Vvi7g895 Vvi7g895 789761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g895 280 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Vvi7g895 280 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Vvi7g895 280 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Vvi7g895 280 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Vvi7g895 280 Coils Coil 125 159 - -
Vvi7g895 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 187 225 IPR045224 GO:0003700
Vvi7g895 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 237 271 IPR045224 GO:0003700
Vvi7g895 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 186 IPR045224 GO:0003700
Vvi7g895 280 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Vvi7g895 280 SMART HOX_1 55 116 IPR001356 GO:0003677
Vvi7g895 280 CDD homeodomain 57 113 IPR001356 GO:0003677
Vvi7g895 280 MobiDBLite consensus disorder prediction 195 218 - -
Vvi7g895 280 MobiDBLite consensus disorder prediction 189 218 - -
Vvi7g895 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 187 225 - -
Vvi7g895 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 237 271 - -
Vvi7g895 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 186 - -
Vvi7g895 280 Gene3D - 55 119 - -
Vvi7g895 280 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vvi7g895 280 SUPERFAMILY Homeodomain-like 44 114 IPR009057 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15074 PF00046 Homeodomain 3.00E-16 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g895 K09338 - vvi:100853966 528.48