Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g9 ATGGCGAGCAATCCCTCGGAAGCTCCAGCGGACGATTTTCTCGAGCAAATCCTCGGAATTCCCACCTACCCCGCAGCTGACCCTAATTTGGCTGCTAATGACGTGAATTTGGCCGCTCCTATGGTGCTTCAGCTCGGCTCCGGCGAAGGCTCTGGCCACATCGCCGGCGGGTACCAGGGAACCATGTTTCCGTTAGGGTTGAGGTTGGAGCAGGGAAAGAGCAGCTTTCTGAAGCCCGAAGACGCGTCTGGCAGTGGCAAGCGCTTTCGTGAGGAGGTTATTGATGGTAGAGCTTCTACCGTGAAAAATGCTTTCCATGGTCAACCAATGCAGGCTACCGTTGCTGCAGCACCACATCCTCCTGCAATTCGCCCAAGGGTGCGGGCGAGACGTGGACAGGCCACAGATCCACACAGCATTGCTGAGCGGTTACGCAGAGAAAGAATAGCAGAGAGAATTAGAGCACTGCAGGAACTAGTTCCTAGTGTCAACAAGACGGATAGAGCTGCAATGCTTGATGAAATTGTGGATTATGTGAAATTCCTAAGGCTCCAAGTAAAGGTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTTGCACCACTTGTAACAGACATTCCATTAGCATCAGTCGAGGAAGAAGCAAGTGAAGGGGGAAGAAATGAACCGGCATGGGAGAAATGGTCAAACGACGGTACAGAACGACAAGTTGCTAAGCTCATGGAAGAGAATGTTGGGGCTGCAATGCAGTTCCTTCAGTCCAAGGCACTCTGCATCATGCCCATCTCTCTCGCTTCAGCCATTTACCACTCTCAGCAGCCGGACACAACTCCACTGATCAAGCCCCAGACAAATCCCCCATCGTAA 870 52.41 MASNPSEAPADDFLEQILGIPTYPAADPNLAANDVNLAAPMVLQLGSGEGSGHIAGGYQGTMFPLGLRLEQGKSSFLKPEDASGSGKRFREEVIDGRASTVKNAFHGQPMQATVAAAPHPPAIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLASVEEEASEGGRNEPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHSQQPDTTPLIKPQTNPPS* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 138159 145185 + Vvi7g9 Vvi7g9 788875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g9 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 277 - -
Vvi7g9 289 SMART finulus 139 188 IPR011598 GO:0046983
Vvi7g9 289 PANTHER TRANSCRIPTION FACTOR UNE12 ISOFORM X1 7 277 - -
Vvi7g9 289 Pfam Helix-loop-helix DNA-binding domain 138 182 IPR011598 GO:0046983
Vvi7g9 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 192 IPR036638 GO:0046983
Vvi7g9 289 Gene3D - 128 190 IPR036638 GO:0046983
Vvi7g9 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g9 Vvi14g507 ECH
Vvi5g598 Vvi7g9 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15076 PF00010 HLH 1.00E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g9 - - vvi:100247732 531.176