Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g913 ATGAGAAGAACTTCTTCACATGCTCAAGATCACATAATGGCAGAGAGAAAGCGGAGGGAAAAACTCAGCCAGCGCTTCATAGCTCTTTCAGCCCTTGTTCCTGGTCTGAAGAAGATGGACAAAGCTTCAGTTCTTGGAGATGCTATCAAGTACCTGAAGCAACTTCAAGAGCGTGTGAAATCACTGGAGGAACAAATGAAGGAAACCACTGTGGAATCAGTGGTTTTTATAAAGAAGTCTCAGCTCTCTGCTGACGATGAGACCTCTTCATGTGATGAGAACTTCGATGGCTGCAGAGAGGACGCAGTCAGAGATATTGAGGCACGAGTTTCGGATAAGAATGTCCTCATCAGGATTCACTGCAAGAAACAGAAAGGATTTGTAGCCAAAGTTCTAGGTGAAATAGAGGAGCATCATCTATCTGTCGTCAACAGCAGTGTGTTGCCATTTGGGAAACATGCCATGGATATAACTGTTGTTGCTCAGATGGGCGATGAGTTGCAGGTGACAGTGAAGGATCTCGTGAATAACCTACGACTGGCTTTTCTAAAGTTCATGTAA 561 44.39 MRRTSSHAQDHIMAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQLQERVKSLEEQMKETTVESVVFIKKSQLSADDETSSCDENFDGCREDAVRDIEARVSDKNVLIRIHCKKQKGFVAKVLGEIEEHHLSVVNSSVLPFGKHAMDITVVAQMGDELQVTVKDLVNNLRLAFLKFM* 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15259648 15260585 + Vvi7g913 Vvi7g913 789779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g913 186 PANTHER BHLH TRANSCRIPTION FACTOR 3 185 - -
Vvi7g913 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 73 IPR036638 GO:0046983
Vvi7g913 186 Pfam Helix-loop-helix DNA-binding domain 10 56 IPR011598 GO:0046983
Vvi7g913 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 55 IPR011598 GO:0046983
Vvi7g913 186 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 3 185 - -
Vvi7g913 186 Gene3D - 1 71 IPR036638 GO:0046983
Vvi7g913 186 SMART finulus 12 61 IPR011598 GO:0046983
Vvi7g913 186 CDD bHLH_AtNAI1_like 6 80 - -
Vvi7g913 186 CDD ACT 117 174 - -
Vvi7g913 186 Coils Coil 45 72 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15077 PF00010 HLH 8.30E-11 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g913 - - vvi:100251406 360.533