Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7g913 | ATGAGAAGAACTTCTTCACATGCTCAAGATCACATAATGGCAGAGAGAAAGCGGAGGGAAAAACTCAGCCAGCGCTTCATAGCTCTTTCAGCCCTTGTTCCTGGTCTGAAGAAGATGGACAAAGCTTCAGTTCTTGGAGATGCTATCAAGTACCTGAAGCAACTTCAAGAGCGTGTGAAATCACTGGAGGAACAAATGAAGGAAACCACTGTGGAATCAGTGGTTTTTATAAAGAAGTCTCAGCTCTCTGCTGACGATGAGACCTCTTCATGTGATGAGAACTTCGATGGCTGCAGAGAGGACGCAGTCAGAGATATTGAGGCACGAGTTTCGGATAAGAATGTCCTCATCAGGATTCACTGCAAGAAACAGAAAGGATTTGTAGCCAAAGTTCTAGGTGAAATAGAGGAGCATCATCTATCTGTCGTCAACAGCAGTGTGTTGCCATTTGGGAAACATGCCATGGATATAACTGTTGTTGCTCAGATGGGCGATGAGTTGCAGGTGACAGTGAAGGATCTCGTGAATAACCTACGACTGGCTTTTCTAAAGTTCATGTAA | 561 | 44.39 | MRRTSSHAQDHIMAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQLQERVKSLEEQMKETTVESVVFIKKSQLSADDETSSCDENFDGCREDAVRDIEARVSDKNVLIRIHCKKQKGFVAKVLGEIEEHHLSVVNSSVLPFGKHAMDITVVAQMGDELQVTVKDLVNNLRLAFLKFM* | 187 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 15259648 | 15260585 | + | Vvi7g913 | Vvi7g913 | 789779 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7g913 | 186 | PANTHER | BHLH TRANSCRIPTION FACTOR | 3 | 185 | - | - | |
Vvi7g913 | 186 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 10 | 73 | IPR036638 | GO:0046983 | |
Vvi7g913 | 186 | Pfam | Helix-loop-helix DNA-binding domain | 10 | 56 | IPR011598 | GO:0046983 | |
Vvi7g913 | 186 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 6 | 55 | IPR011598 | GO:0046983 | |
Vvi7g913 | 186 | PANTHER | TRANSCRIPTION FACTOR BHLH18-LIKE | 3 | 185 | - | - | |
Vvi7g913 | 186 | Gene3D | - | 1 | 71 | IPR036638 | GO:0046983 | |
Vvi7g913 | 186 | SMART | finulus | 12 | 61 | IPR011598 | GO:0046983 | |
Vvi7g913 | 186 | CDD | bHLH_AtNAI1_like | 6 | 80 | - | - | |
Vvi7g913 | 186 | CDD | ACT | 117 | 174 | - | - | |
Vvi7g913 | 186 | Coils | Coil | 45 | 72 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15077 | PF00010 | HLH | 8.30E-11 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7g913 | - | - | vvi:100251406 | 360.533 |