Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g916 ATGGAGGATCCCACCTTCATACATCAGTACAGCCCGATGCAGTCTCTTGGTGACTCGCTTGATGAGTTCGATTTCAAGTCCTTTTCTTCTGAGAACTTCTCATCTTACCCATCTACCAGTCCCAAAAGCAGCAACCCCCACTTGTTCGATTCAATCATTGAAAATTTTCAGACAGGAGGAGTAGAGAGGCCAAGAAAACAGCTCAAGACCGCTAGTGGGAAGTTTTGCCCCACGGGATCCAAAACTCTCGAAGCTTCTTCATCTTCCTCCTCCTACCTGATTTCTTTCGGGAACTCGGACTTGAACCCAATCCCTGACGATACGCTAATCTGGAACGGGAAGCCTAAGGATAGGGCTGCTGCTAACGGATATATGAATTTGGAGTCTTTGATTTCTCAGGACTCCTATCAGAAGCAAGACCATTCACCAACATATGGCCAGGGAACCAAGAGCCTCAGTTCCACAAGAAATCCTTCACAAAATCAGGAACATGTAATAGCCGAGAGAAAGCGTCGGGAAAAGCTCAACCTGCAGTTCATAGCTCTTTCAGCCATCATTCCAGGCCTAAAGAAGACAGACAAGGCGTCAGTCCTTGGAGATGCTGTCAAATACGTGAAACAGCTTCAAGAACGTGTGAAGATGCTCGAAGAACAGACGACAAAGAAAATGGTCGAATCAGTGGTCACTGTAAAGAAATATCAGCTCTCAGATGACGAAACATCTTTATCTTATCACGACTCTGATAGCTCCTCCAACCAACCACTCCTTGAAATTGAAGCAAGAGTTTCAAACAAGGATGTACTCATTAGAATCCACTGCCAGAAAGAAAAGGGATTTGCTGTAAAAATACTTGGAGAAGTAGAGAAGCTTCACCTAACTGTCATCAATAGCAGTTTCACGGCATTTGGGGATTATATTATGGATATTACTATTGTTGCTCAGATGGACAATGGTTTCTGTACGACTGCAAAGGATCTAGTTAAAAATCTCCGACTGGCCTTTCTGCAGTTCATGTGA 1017 44.15 MEDPTFIHQYSPMQSLGDSLDEFDFKSFSSENFSSYPSTSPKSSNPHLFDSIIENFQTGGVERPRKQLKTASGKFCPTGSKTLEASSSSSSYLISFGNSDLNPIPDDTLIWNGKPKDRAAANGYMNLESLISQDSYQKQDHSPTYGQGTKSLSSTRNPSQNQEHVIAERKRREKLNLQFIALSAIIPGLKKTDKASVLGDAVKYVKQLQERVKMLEEQTTKKMVESVVTVKKYQLSDDETSLSYHDSDSSSNQPLLEIEARVSNKDVLIRIHCQKEKGFAVKILGEVEKLHLTVINSSFTAFGDYIMDITIVAQMDNGFCTTAKDLVKNLRLAFLQFM* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15299382 15301022 + Vvi7g916 Vvi7g916 789782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g916 338 PANTHER TRANSCRIPTION FACTOR BHLH18-LIKE 1 337 - -
Vvi7g916 338 MobiDBLite consensus disorder prediction 135 162 - -
Vvi7g916 338 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Vvi7g916 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Vvi7g916 338 PANTHER BHLH TRANSCRIPTION FACTOR 1 337 - -
Vvi7g916 338 SMART finulus 165 214 IPR011598 GO:0046983
Vvi7g916 338 MobiDBLite consensus disorder prediction 135 166 - -
Vvi7g916 338 CDD bHLH_AtNAI1_like 162 232 - -
Vvi7g916 338 Gene3D - 158 232 IPR036638 GO:0046983
Vvi7g916 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 223 IPR036638 GO:0046983
Vvi7g916 338 Coils Coil 198 225 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15079 PF00010 HLH 1.80E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g916 - - vvi:100259543 625.935