Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g919 ATGGATACCTTGTTTAGACTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTGCATCTTTTGTCAGACACCCACCGAATTCTCTTTCTCCCCTGCCCGTGATCTCCACCTAGAATTCAACTCTTCTGCTTCCGGCAAGTGGGCTTCCGAAATCCTCCTGGAGACAGCACGAGCCATCGCTGATAAGAACAGCGCTCGCGTTCAACAACTCATGTGGATGCTCAACGAACTTAGCTCTCCTTATGGCGACACCGATCAGAAGCTCGCTGCTTACTTCCTTCAAGCCTTGTTTAGCCGCATGACCGACTCGGGTGAGAGGTGTTACCGGACTTTAATATCCGCATCGGAGAAGACTTGCTCATTCGAATCCACCAGAAAAATGGTATTGAAATTTCAAGAGGTGAGCCCTTGGACCACGTTTGGACATGTAGCTTGTAATGGTGCAATCATGGAAGCTCTTGAAGGCGAGAGCAAGCTCCATATAATTGATATAAGCAACACCTACTGCACTCAGTGGCCTACCTTGCTCGAAGCCCTAGCCACCCGCACTGACGAGACCCCTCACCTCCGTCTCACCACCGTCGTCACAAGCAAAGCCGGCACCGGAGGGATGGCACCAGTGCAAAAACTGATGAAAGAGATTGGAAACAGAATGGAAAAGTTCGCTAGGCTCATGGGTGTGCCCTTCAAATTCAACGCACTCGCAGTAAACTGCGTCGGCGCGTTGCACTCAGTCACCGCATTCGGTAACCGCCGAGACATCGTCGTATCATCTTTCCGGAGATTGCATCCGAGGATCATCACCGTCGTGGAAGAAGAAGCTGATCTCGATGTGGGCGTGGATGGGTTCGACTTCGTCAAAGGTTTTCAGGAATGCTTAAGATGGTTTAGGGTTTACTTGGAGTCATTAGACGAGAGCTTCCCTCGCACTAGCAACGAGCGCCTCATGCTCGAACGCGCCGCCGGACGCGCAATCGTCGACCTGGTGGCTTGCCCGCCGTCGGAGTCGATCGAACGGCGCGAGACGGCCACGCGCTGGTCTCAGCGGCTCCATGCAAGCGGGTTCTCTCCGGTGTCGTTTAGCGATGAAGTATGCGATGACGTACGTGCTCTCCTGAGGAGATACAAGGAGGGTTGGTCAATGACACAGTCCTCCGACGCCGGAATATTCCTCTCATGGAAAGACCAGCCGGTGGTGTGGACCAGTGCATGGAAACCTTGA 1260 50.56 MDTLFRLHXXXXXXXXXXXXXXXXXXXXXLCIFCQTPTEFSFSPARDLHLEFNSSASGKWASEILLETARAIADKNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGERCYRTLISASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNGAIMEALEGESKLHIIDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTSKAGTGGMAPVQKLMKEIGNRMEKFARLMGVPFKFNALAVNCVGALHSVTAFGNRRDIVVSSFRRLHPRIITVVEEEADLDVGVDGFDFVKGFQECLRWFRVYLESLDESFPRTSNERLMLERAAGRAIVDLVACPPSESIERRETATRWSQRLHASGFSPVSFSDEVCDDVRALLRRYKEGWSMTQSSDAGIFLSWKDQPVVWTSAWKP* 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15325227 15327698 - Vvi7g919 Vvi7g919 789785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g919 419 ProSiteProfiles GRAS family profile. 52 418 IPR005202 -
Vvi7g919 419 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 246 IPR005202 -
Vvi7g919 419 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 246 418 IPR005202 -
Vvi7g919 419 PANTHER PROTEIN SHORT-ROOT 246 418 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Vvi7g919 419 PANTHER PROTEIN SHORT-ROOT 40 246 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Vvi7g919 419 Pfam GRAS domain family 63 247 IPR005202 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15080 PF03514 GRAS 6.70E-53 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g919 - - vvi:100263197 753.051