Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g920 ATGGGGAAGAAACAACACAGCAAAGATCGCATGTTCATAACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAATCCAAAAACGCCTCCGTCCCTTTCAAACGCCTCCCCTTCTACTGCTGCGCGGTCACGTTTACGCCGTTTGGGGATCCGGTGTGCACCAGCGATGGCACCGTCTTCGACATTATGAACATAATTCCGTACATTAGGAAGTTTGGTAAACATCCTGTTACTGGGGCTCCACTCAAGCAAGAGGATCTCATTCCACTTACTTTCCACAAGAATTCAGATGGAGAATATCATTGCCCGGTGCTGAATAAAGTTTTCACTGAATTTACACACATAGTTGCTGTAAAGACTACAGGAAATGTGTTCTGTTATGAGGCAATCAAAGAATTAAACCTCAAAACCAAGAACTGGAAGGAGCTCCTCACCGATGAACCATTCACTAGAGAAGACCTCATAACAATTCAGAATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAGAACTAAAAAAGATGGGTTTGGATCCAACCCATGGGATAAATGTGAAAGGGGATATGAAGCAAATGCTAGAGGAGCTTGGAACTGAGAAAGCAAGGCAAACCGCCCTTCATGGGGGAGGTGGCAACAAGGCACAAAATGAAAGAGCGGCCGCACTGGCTGCCATTCTAGCTGCAAGATCACGCATTAAAGAGGAATCTGAGTCAGATAAGAATGGAGAGGGTAAAACCGGCCAGACTTTCAGTATTGTGGATGCTGCATCTGCCTCAGTTCATGGAAGAAGTGCTGCTGCAGCAAAAGCCACATCATCTGATAAAACTGCTGCTCGTATAGCTATGCACATGGCTGGTGAGAGGGCCCCTGTGAATGCAAAGATGGTAAAAAGCCGTTTCACCACTGGTGCTGCTTCAAGATCCTTCACCTCCACCTCTTATGATCCTGTCACAAAAAATGAATTTGAATATATCAAAGTCGAGAAGAATCCTACCAAGAAAGGCTATGTTCAGCTGCACACAACACACGGTGATTTGAACATTGAGCTTCATTGTGATATAACTCCCAGGGCATGTGAGAACTTCATCACTCTCTGTGAACGTGGCTATTATAATGGGATAGCTTTTCATAGAAACATTCGGAATTTTATGATTCAAGGGGGTGATCCAACTGGCACTGGGAGTGGGGGAGAATCTATATGGGGAAAACCGTTCAAAGATGAGCTGAACTCCAAGTTGCTTCACTCTGGAAGGGGTGTTGTTAGCATGGCAAACAGTGGGCCCCACACAAATGGGTCCCAATTTTTTATCCTATACAAATCTGCAAATCATTTGAATTTCAAACATACAGTTTTTGGTGGAGTTGTTGGTGGCTTGATGACACTATCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATAGGCCCCTGGAAGAGATTAAAATAACTGGTGTAACAGTATTTGTCAATCCTTACACTGAACCTGATGCTGAAGAAGAGGAAGAGAAAACCAAAGATGGGAAGAATGCCGAGGATGAAGAAAATGATAAGGTTGGGGCATGGTTTAGCAATCCAGGTACAGGAACAGCAGAGCCTGGAGATGTAGGTGGTGGTGTTGGGAAGTACTTGAAGGCAAGGACTGGTCAAGCTGAACATGCTGCTGCTGACACTGGTTTGCAGGCAATGACTGTGGCAAAGAAAAGGAAATTGGGCGTCCCAACTGCAGAATTTAAGGACTTTTCTGCCTGGTAA 1794 44.93 MGKKQHSKDRMFITKTEWATEWGGAKSKNASVPFKRLPFYCCAVTFTPFGDPVCTSDGTVFDIMNIIPYIRKFGKHPVTGAPLKQEDLIPLTFHKNSDGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAIKELNLKTKNWKELLTDEPFTREDLITIQNPNALDSKALLDFDHVKNSLKLDDEELKKMGLDPTHGINVKGDMKQMLEELGTEKARQTALHGGGGNKAQNERAAALAAILAARSRIKEESESDKNGEGKTGQTFSIVDAASASVHGRSAAAAKATSSDKTAARIAMHMAGERAPVNAKMVKSRFTTGAASRSFTSTSYDPVTKNEFEYIKVEKNPTKKGYVQLHTTHGDLNIELHCDITPRACENFITLCERGYYNGIAFHRNIRNFMIQGGDPTGTGSGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLMTLSAMEKVPVDDNDRPLEEIKITGVTVFVNPYTEPDAEEEEEKTKDGKNAEDEENDKVGAWFSNPGTGTAEPGDVGGGVGKYLKARTGQAEHAAADTGLQAMTVAKKRKLGVPTAEFKDFSAW* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15331692 15344387 - Vvi7g920 Vvi7g920 789786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g920 597 MobiDBLite consensus disorder prediction 506 549 - -
Vvi7g920 597 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Vvi7g920 597 MobiDBLite consensus disorder prediction 515 532 - -
Vvi7g920 597 CDD cyclophilin_RING 350 508 - -
Vvi7g920 597 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Vvi7g920 597 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Vvi7g920 597 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 595 - -
Vvi7g920 597 SUPERFAMILY RING/U-box 37 104 - -
Vvi7g920 597 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 595 IPR044666 -
Vvi7g920 597 SUPERFAMILY Cyclophilin-like 350 510 IPR029000 -
Vvi7g920 597 Gene3D - 331 515 IPR029000 -
Vvi7g920 597 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Vvi7g920 597 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Vvi7g920 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Vvi7g920 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Vvi7g920 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Vvi7g920 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Vvi7g920 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Vvi7g920 597 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g920 K10598 - vvi:100241654 1182.16