Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi7g928 | ATGGGGAAGAAACAACACAGCAAAGATCGCATGTTCATAACCAAAACGGAGTGGGCCACCGAATGGGGCGGCGCCAAATCCAAAAACGCCTCCGTCCCTTTCAAACGCCTCCCCTTCTACTGCTGCGCGGTCACGTTTACGCCGTTTGGGGATCCGGTGTGCACCAGAGATGGCACCGTCTTCGACATTATGAACATAATTCCGTACATTAGGAAGTTTGGTAAACATCCTGTTACTGGGGCTCCACTCAAGCAAGAGGATCTCATTCCACTTACTTTCCACAAGAATTCAGATGGTATATTTCCTTTTTCAATTTTTGTTTCTTGA | 327 | 47.4 | MGKKQHSKDRMFITKTEWATEWGGAKSKNASVPFKRLPFYCCAVTFTPFGDPVCTRDGTVFDIMNIIPYIRKFGKHPVTGAPLKQEDLIPLTFHKNSDGIFPFSIFVS* | 109 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 15400076 | 15400608 | - | Vvi7g928 | Vvi7g928 | 789794 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi7g928 | 108 | PANTHER | RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 | 2 | 101 | - | - | |
| Vvi7g928 | 108 | SMART | Ubox_2 | 39 | 101 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi7g928 | 108 | Pfam | U-box domain | 39 | 91 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi7g928 | 108 | SUPERFAMILY | RING/U-box | 37 | 98 | - | - | |
| Vvi7g928 | 108 | CDD | RING-Ubox_PPIL2 | 38 | 99 | IPR026951 | - | |
| Vvi7g928 | 108 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 96 | IPR013083 | - | |
| Vvi7g928 | 108 | ProSiteProfiles | U-box domain profile. | 35 | 108 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi7g928 | 108 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 101 | IPR044666 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi7g928 | K10598 | - | vvi:104879909 | 233.417 |