Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g948 ATGAGCTGCAACGGGTGCCGTGTGCTTCGGAAGGGGTGTAGCGAGTCGTGTATTCTACGCCCGTGTTTGCAGTGGATCGAGAGTGCTGAGTCCCAAGGCCACGCCACTGTGTTTGTGGCCAAGTTTTTTGGTCGTGCGGGACTGATGTCCTTCATCTCTGCTGTTCCTGAGAACCAGAGACCTGCTTTGTTTCGGTCACTTTTGTATGAGGCGTGTGGCCGGACCGTGAATCCGGTGAACGGGGCCGTGGGGCTACTGGGGACGGGGAACTGGCACGTGTGCCAGGCGGCGATGGAAACAGTCCTCCGAGGGGGTACTCTGCGGGCGATGCCGGAACTTCTTAACGGAGTTTCGACCCCGGAGTGCGACGAAGCCTCTGAGGCCGAGGTAACTTGTACGGACATGTTCAAGCTCAGAGATCCGAATTCGAGCTCACGATCGAAGGTGCCCAAACGGAAGCGCCTGGAAGAGGCATCCAAAGTGCAGTGTACGGATCTGGATCTCCGCTTAACTCCGGGTTTAACCGGTAAAATATCATCTCGAGGCTTGGGAGCGATGAGTTATCTTCCAGAAACTCGCCGGCCGGGAACTCCGTCGATGAATTCAGAAGAATCTGTGACGACCACGTGCTTCGAAACCCCTCATTCGCCAGAAGGAGAAAGAAAGCTTCTCAACTTGTTCCTTTAA 687 55.46 MSCNGCRVLRKGCSESCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISAVPENQRPALFRSLLYEACGRTVNPVNGAVGLLGTGNWHVCQAAMETVLRGGTLRAMPELLNGVSTPECDEASEAEVTCTDMFKLRDPNSSSRSKVPKRKRLEEASKVQCTDLDLRLTPGLTGKISSRGLGAMSYLPETRRPGTPSMNSEESVTTTCFETPHSPEGERKLLNLFL* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15589315 15590604 + Vvi7g948 Vvi7g948 789814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g948 228 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Vvi7g948 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 227 - -
Vvi7g948 228 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vvi7g948 228 MobiDBLite consensus disorder prediction 194 214 - -
Vvi7g948 228 MobiDBLite consensus disorder prediction 187 215 - -
Vvi7g948 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g692 Vvi7g948 ECH
Vvi7g948 Vvi18g662 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15083 PF03195 LOB 2.40E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g948 - - vvi:100261250 462.996