Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g972 ATGGAGATATCATTGTTAAAAAGGCTTCTAAACAAAATTTCCTCATTTTTCCTTTTATCATCTCATGACAACATAGATTCCGAACCTGTTCGGAAGTACTACCAGAAGATAGAAGAGATATTAAAGTTGTTGAAGCCAATACTTAGCACCATTATCGATTCTGAAATAGCTTCTGATGAACTGCTTAATAAGGCATTTGAAGAACTGGGTCGATCTGTTGATGACCTGCAGGAGCTCTTTGAAAACTGCCATCCACTGATGAGTAAAGTTTATTTTGTTCTGCAAATTGAACTATCGATATCAAAGATTAGAACTTCTGGCCTGGAAATTTTTCAGCAGCTTAAATCATCTCATCAATGCCTCCCTGATGAATTGAGTTCGGCATCTCTTGAGACATGCATACAGAAAGTTAAGCACATGGGATATGAACAAACATCAACTATACTTCAAGAAGCAATAAGAAATCAAGTGCAGGGTGCCGGGTCCAGCTCAGAGAGCCTGATGAAACTTGCAGATTGCCTGAGCCTAAGGTCAAACCAGGAGCTTCTAATTGAGGCTGTGGCTCTGGAAAAGCTGAAGGAGAATGCTGAACAAGCTGAAAAAACTGAGGAAGCTGAATATATTGATCAAATGATTACTCTTGCTACCCAAATGCATGATCGTTTTATCATAACGAAACAGTCCCAGAGCTGTAATCCCATTCCAATACCGGCTGATTTCTGCTGTCCTCTCTCCCTTGAACTGATGACAGACCCTGTAATTGTGGCATCAGGGCAAACCTACGAGCGGGCTTTTATCAGGAAATGGCTTGATCTTGGGCTAACTGTTTGCCCTAAAACAAGGCAAACTCTGGCACACACCAACCTAATACCCAACTACACTGTAAAGGCTCTGATTGCAAATTGGTGTGAGTCTAACAATGTGAAGCTGCCTGACCCTGTAAAGTCTTTGAATTTAAATCACCAACCAATGTCACCTGAGTCAACTCGCTTTACTGGTTCTCCTGGAAATAACTTAGTCTCATCTGTTGGCCAGCCCTCTACATTACCATCAAGAAAAGAATCTTCTAATTCTACTGGGGCTGATGCAAATTTGGCTAGGAGCCAAGCAATGTGGCGCCGGCCATCAGAGAGGTTTGTTCCAAGGATAGTGTCTTCTCCAACTACTGAAACGAGAGCTGATCTTTCTGGCGTTGAAGCCCAAGTTCAGAGGCTGGTTGAGGACTTGAAGAGCGAGTCAGTTGAGACTCAAAGAGAGGCCACATCTGAACTTCGACTGCTTGCCAAGCACAACATGGATAATCGGATCGTAATTGCAAACTGTGGGGCCATAAGCCTGTTGGTTAATCTACTTCGTTCAGAGGATGCAAAGGCTCAGGAAAATGCCGTTACAGCACTTCTCAACTTATCTATCAATGACAATAACAAAACTGCAATTGCAAATGCTCAGGCAATCGAACCTTTGATTCATGTCCTGCAGACAGGGAGCCCCGAGGCTAAGGAGAATTCAGCTGCCACTCTTTTTAGCCTCTCAGTGATTGAGGATAACAAGGCCGCGATTGGCAGATCAGGAGCAATTGCACCTCTTGTTGAATTATTAGGCAACGGGACCCCTAGGGGAAAGAAAGATGCAGCCACAGCTTTATTTAATTTGTCAATATTTCATGAAAACAAGACCCGTATTGTGCAGGCTGGTGCTGTGAGGCATCTTGTCGAGTTGATGGACCCTGCAGCTGGAATGGTTGATAAGGCAGTTGCTGTTCTGGCTAATCTTGCTACTATTACTGAGGGGAGGCATGCGATTGATCAGGCAGGAGGGATCCCTGTTCTTGTTGAAGTTGTTGAATTAGGTTCTGCAAGAGGGAAGGAGAATGCAGCTGCTGCTCTTCTACAGCTGTGCTCAAACAGCAGTAGATCCTGTATTAAGGTGCTTCAGGAGGGAGCTGTCCCACCATTAGTGGCATTGTCGCAATCTGGCACCCCAAGAGCCAAGGAAAAGGCACAGGCACTTCTGAACTGCTTCAGAAGCCGTCATGCTGGTAGGGGGTGA 2049 44.51 MEISLLKRLLNKISSFFLLSSHDNIDSEPVRKYYQKIEEILKLLKPILSTIIDSEIASDELLNKAFEELGRSVDDLQELFENCHPLMSKVYFVLQIELSISKIRTSGLEIFQQLKSSHQCLPDELSSASLETCIQKVKHMGYEQTSTILQEAIRNQVQGAGSSSESLMKLADCLSLRSNQELLIEAVALEKLKENAEQAEKTEEAEYIDQMITLATQMHDRFIITKQSQSCNPIPIPADFCCPLSLELMTDPVIVASGQTYERAFIRKWLDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKLPDPVKSLNLNHQPMSPESTRFTGSPGNNLVSSVGQPSTLPSRKESSNSTGADANLARSQAMWRRPSERFVPRIVSSPTTETRADLSGVEAQVQRLVEDLKSESVETQREATSELRLLAKHNMDNRIVIANCGAISLLVNLLRSEDAKAQENAVTALLNLSINDNNKTAIANAQAIEPLIHVLQTGSPEAKENSAATLFSLSVIEDNKAAIGRSGAIAPLVELLGNGTPRGKKDAATALFNLSIFHENKTRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATITEGRHAIDQAGGIPVLVEVVELGSARGKENAAAALLQLCSNSSRSCIKVLQEGAVPPLVALSQSGTPRAKEKAQALLNCFRSRHAGRG* 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15824523 15838909 - Vvi7g972 Vvi7g972 789838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g972 682 Coils Coil 399 419 - -
Vvi7g972 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 524 566 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 431 471 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 513 553 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 594 634 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 635 675 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 385 429 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 554 593 IPR000225 GO:0005515
Vvi7g972 682 SMART arm_5 472 512 IPR000225 GO:0005515
Vvi7g972 682 Pfam Armadillo/beta-catenin-like repeat 515 552 IPR000225 GO:0005515
Vvi7g972 682 Pfam Armadillo/beta-catenin-like repeat 433 470 IPR000225 GO:0005515
Vvi7g972 682 Pfam Armadillo/beta-catenin-like repeat 472 511 IPR000225 GO:0005515
Vvi7g972 682 MobiDBLite consensus disorder prediction 319 365 - -
Vvi7g972 682 PANTHER U BOX DOMAIN-CONTAINING 366 678 - -
Vvi7g972 682 PANTHER U BOX DOMAIN-CONTAINING 7 335 - -
Vvi7g972 682 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vvi7g972 682 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vvi7g972 682 Coils Coil 179 209 - -
Vvi7g972 682 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Vvi7g972 682 SUPERFAMILY ARM repeat 402 674 IPR016024 -
Vvi7g972 682 Gene3D - 474 580 IPR011989 -
Vvi7g972 682 Gene3D - 385 473 IPR011989 -
Vvi7g972 682 Gene3D - 581 681 IPR011989 -
Vvi7g972 682 MobiDBLite consensus disorder prediction 319 367 - -
Vvi7g972 682 SUPERFAMILY RING/U-box 227 313 - -
Vvi7g972 682 CDD RING-Ubox_PUB 240 282 IPR045210 -
Vvi7g972 682 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 366 678 - -
Vvi7g972 682 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 335 - -
Vvi7g972 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Vvi7g972 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Vvi7g972 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 565 606 IPR000225 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g972 - - vvi:100257770 1145.18