Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7g975 ATGAGTATCGCCTTCCTCGATCCCGGGAACCTGGAGGGGGATCTGCAGGCCGGCGCCATCGCCGGGTACTCGTTGCTGTGGATGGTGCTGTGGGTCATGGCGGAGCTGGCTTTGATTGGGGCTGATATTCAGGAAGTTATCGGGAGCGCTATTGCTATTAAGATTCTTAGCAATGGAGTTTTGCCTCTTTGGTCTGGCGTTATCATTACCGCGTTTGATTGCTTTATCTTCCTATTTCTTGAGAACTATGGTGTGAGGAAATTGGAAGCAGTTTTCGCATTCCTCATTGCGACAATGGCAATCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCCAGTGGCGTAGAACTTCTTCTTGGTATTTTGATTCCAAAACTTAGCTCCAAGACGATAAAGCAAGCTGTGGGAGTTGTGGGTTGCATAATCATGCCTCACAATGTATTCTTGCATTCTGCCCTGGTTCAGTCAAGGGAGATTGACCACAGCAAGAAAGGCCGGGTTCAAGAAGCCCTCAATTACTACTCCATTGAGTCCACTGTTGCCCTCATATTGTCCTTCATTATCAATCTATTTGTTACAACTGTGTTTGCAAAGGGGTTTTATGGTACGGAACAAGCCAATAATATCGGGCTTGTAAATGCGGGCCAGTATCTTCAAGAGAAGTATGGAGGGGGGTTTTTCCCAATTCTATATATATGGGGTATTGGGTTACTAGCAGCTGGTCAGAGTAGCACAATTACAGGCACCTATGCAGGGCAGTTTATCATGGGAGGTTTTCTAAATCTGCGTTTGAAGAAATGGATTAGGGCATTGATCACGCGAAGCTGTGCCATTGTGCCCACTATGATAGTTGCTCTTGTTTTTGATACCTCTGAGGACACTTTAGATGTTATGAATGAGTGGCTTAATGTGCTTCAGTCTATTCAGATCCCATTTGCACTTATTCCCCTTCTTTGTTTGGTGTCCAAGGAGCAGATCATGGGGACTTTCAAAATTGGCCCAGTTCTCAAGGTGGTGGCATGGCTTGTGGCTGCCCTGGTGATAATAATCAACGGGTATCTTTTGGTGGATTTTTTCTCTTCAGAAGTGAATGGTCTGTTGATTGGCTTTTTCATATGCACTTTCACAGCTGCATACGTTGCATTTATTATTTATCTTGTTTTCCGGGCTGTTAACTTTTATCCTTGGCTCCCCTTTCTACCATCAAAGAGGTTATCAAACACAGGGAGCTGA 1233 44.85 MSIAFLDPGNLEGDLQAGAIAGYSLLWMVLWVMAELALIGADIQEVIGSAIAIKILSNGVLPLWSGVIITAFDCFIFLFLENYGVRKLEAVFAFLIATMAISFAWMFGEAKPSGVELLLGILIPKLSSKTIKQAVGVVGCIIMPHNVFLHSALVQSREIDHSKKGRVQEALNYYSIESTVALILSFIINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSCAIVPTMIVALVFDTSEDTLDVMNEWLNVLQSIQIPFALIPLLCLVSKEQIMGTFKIGPVLKVVAWLVAALVIIINGYLLVDFFSSEVNGLLIGFFICTFTAAYVAFIIYLVFRAVNFYPWLPFLPSKRLSNTGS* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15855260 15859539 - Vvi7g975 Vvi7g975 789841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7g975 410 PANTHER METAL TRANSPORTER NRAMP3 1 29 - -
Vvi7g975 410 PANTHER METAL TRANSPORTER NRAMP3 28 397 - -
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 30 56 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 60 79 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 85 106 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 134 157 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 241 260 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 269 286 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PRINTS Natural resistance-associated macrophage protein signature 303 322 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 397 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 1 29 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 29 327 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vvi7g975 410 Pfam Natural resistance-associated macrophage protein 29 333 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi7g975 Vvi18g684 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7g975 K21398 - vvi:100268041 775.778