Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7randomg1 | ATGCCATGCATATATCTCTTGAGTCCTGCCTACTGCTTCTACATGGATAGGATACTCAAATCCCCTGCTTTCAGTATCCTCATGTCAAATTCCGGTCGTTTTTTCGGACAAGCTCCGAAATTTCCTTTCGTTGGAGATATTACCCGGCAGGAGGGCACCGACACACGTGTTCCGCTCCTCAACCTCGCCACTGTTCAGATTAGGGTGGATTCTCTGGAGCGCTTCTTGTCTGACTCGATCAGCCGAAGCGTTGTGATTGGTCCTGACCAGATGGAGATGGTTTCCACCGAGATTGTCTCCGCAATCCACCAGATCATCGTCAACGGAGCTGCTCTTCTCTCCTGTTCTCAGCCCGAATACTCTAGTTTTCCGGCTGCCGGGGCTGCAGTTCTCCCCGAAGGTTATGCTGTGATGGGGAACGAGGAGATCGACGGCGGTAATGACGATGGAGATTGCGAGGTCATCGAACTGGACGCCGTTGAATTGCTAGCTGAGCACATTCACTTTTGCGATATCTGCGGAAAAGGGTTTAAGCGAGACGCAAATCTCCGAATGCACATGCGCGCACATGGAAACCAGTTCAAGACTCCCGAAGCCCTAGCGAAGCCGGATAAGTGTATGGAAACGCAGCGACGCGTGCGGTTCTCGTGCCCCTACCAGGGCTGCAACCGAAACAAAGGTCACAAGAAGTTTCGGGCGTTGAAATCGGTGATATGCGTGAAGAATCACTTCAAGCGGAGTCACTGCCCCAAGATGTACTCCTGTAATCGCTGCAACAAGAAGAGCTTTTCGGTTCTGGCAGACTTGAGGAGCCACTTGAAGCACTGTGGAGAGTCCAAGTGGAGGTGTTCCTGTGGGACAAGTTTTTCACGAAAGGATAAACTGTTTGGGCACATGGCCCTGTTCGAGGGCCACATGCCCGCAGTCGAAAATGGGGATGAGAAATCGGTGCTGTCAGCAGCAGCAGTAGCAGCTGCCACCATGGAAGAAGATGAGCATGAGGACGAAGATGGGATTGGAAAGGAAGAAGAGAATGGGATGTTTGAGGGATTGTTTCAAGGATTTGGTTCAATTGGGGAATACTGTTTGCAGGATGTGTTGAGCTGCTCTTTCATTTGCAATAAAGTTTTTGGATTAAATATACACTGTTAG | 1152 | 50.35 | MPCIYLLSPAYCFYMDRILKSPAFSILMSNSGRFFGQAPKFPFVGDITRQEGTDTRVPLLNLATVQIRVDSLERFLSDSISRSVVIGPDQMEMVSTEIVSAIHQIIVNGAALLSCSQPEYSSFPAAGAAVLPEGYAVMGNEEIDGGNDDGDCEVIELDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGNQFKTPEALAKPDKCMETQRRVRFSCPYQGCNRNKGHKKFRALKSVICVKNHFKRSHCPKMYSCNRCNKKSFSVLADLRSHLKHCGESKWRCSCGTSFSRKDKLFGHMALFEGHMPAVENGDEKSVLSAAAVAAATMEEDEHEDEDGIGKEEENGMFEGLFQGFGSIGEYCLQDVLSCSFICNKVFGLNIHC* | 384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7randomg1 | 383 | Pfam | Zinc finger, C2H2 type | 169 | 190 | IPR013087 | - | |
Vvi7randomg1 | 383 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 147 | 374 | IPR044300 | GO:0010044|GO:0010447 | |
Vvi7randomg1 | 383 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 48 | 121 | IPR044300 | GO:0010044|GO:0010447 | |
Vvi7randomg1 | 383 | SMART | c2h2final6 | 281 | 305 | IPR013087 | - | |
Vvi7randomg1 | 383 | SMART | c2h2final6 | 215 | 248 | IPR013087 | - | |
Vvi7randomg1 | 383 | SMART | c2h2final6 | 253 | 275 | IPR013087 | - | |
Vvi7randomg1 | 383 | SMART | c2h2final6 | 168 | 190 | IPR013087 | - | |
Vvi7randomg1 | 383 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 48 | 121 | - | - | |
Vvi7randomg1 | 383 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 147 | 374 | - | - | |
Vvi7randomg1 | 383 | Gene3D | Classic Zinc Finger | 168 | 191 | - | - | |
Vvi7randomg1 | 383 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 168 | 195 | IPR013087 | - | |
Vvi7randomg1 | 383 | SUPERFAMILY | beta-beta-alpha zinc fingers | 165 | 191 | IPR036236 | - | |
Vvi7randomg1 | 383 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 170 | 190 | IPR013087 | - | |
Vvi7randomg1 | 383 | Gene3D | Classic Zinc Finger | 251 | 301 | - | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15087 | PF00096 | zf-C2H2 | 0.00017 | CL0361 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7randomg1 | - | - | vvi:100243798 | 656.751 |