Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7randomg1 ATGCCATGCATATATCTCTTGAGTCCTGCCTACTGCTTCTACATGGATAGGATACTCAAATCCCCTGCTTTCAGTATCCTCATGTCAAATTCCGGTCGTTTTTTCGGACAAGCTCCGAAATTTCCTTTCGTTGGAGATATTACCCGGCAGGAGGGCACCGACACACGTGTTCCGCTCCTCAACCTCGCCACTGTTCAGATTAGGGTGGATTCTCTGGAGCGCTTCTTGTCTGACTCGATCAGCCGAAGCGTTGTGATTGGTCCTGACCAGATGGAGATGGTTTCCACCGAGATTGTCTCCGCAATCCACCAGATCATCGTCAACGGAGCTGCTCTTCTCTCCTGTTCTCAGCCCGAATACTCTAGTTTTCCGGCTGCCGGGGCTGCAGTTCTCCCCGAAGGTTATGCTGTGATGGGGAACGAGGAGATCGACGGCGGTAATGACGATGGAGATTGCGAGGTCATCGAACTGGACGCCGTTGAATTGCTAGCTGAGCACATTCACTTTTGCGATATCTGCGGAAAAGGGTTTAAGCGAGACGCAAATCTCCGAATGCACATGCGCGCACATGGAAACCAGTTCAAGACTCCCGAAGCCCTAGCGAAGCCGGATAAGTGTATGGAAACGCAGCGACGCGTGCGGTTCTCGTGCCCCTACCAGGGCTGCAACCGAAACAAAGGTCACAAGAAGTTTCGGGCGTTGAAATCGGTGATATGCGTGAAGAATCACTTCAAGCGGAGTCACTGCCCCAAGATGTACTCCTGTAATCGCTGCAACAAGAAGAGCTTTTCGGTTCTGGCAGACTTGAGGAGCCACTTGAAGCACTGTGGAGAGTCCAAGTGGAGGTGTTCCTGTGGGACAAGTTTTTCACGAAAGGATAAACTGTTTGGGCACATGGCCCTGTTCGAGGGCCACATGCCCGCAGTCGAAAATGGGGATGAGAAATCGGTGCTGTCAGCAGCAGCAGTAGCAGCTGCCACCATGGAAGAAGATGAGCATGAGGACGAAGATGGGATTGGAAAGGAAGAAGAGAATGGGATGTTTGAGGGATTGTTTCAAGGATTTGGTTCAATTGGGGAATACTGTTTGCAGGATGTGTTGAGCTGCTCTTTCATTTGCAATAAAGTTTTTGGATTAAATATACACTGTTAG 1152 50.35 MPCIYLLSPAYCFYMDRILKSPAFSILMSNSGRFFGQAPKFPFVGDITRQEGTDTRVPLLNLATVQIRVDSLERFLSDSISRSVVIGPDQMEMVSTEIVSAIHQIIVNGAALLSCSQPEYSSFPAAGAAVLPEGYAVMGNEEIDGGNDDGDCEVIELDAVELLAEHIHFCDICGKGFKRDANLRMHMRAHGNQFKTPEALAKPDKCMETQRRVRFSCPYQGCNRNKGHKKFRALKSVICVKNHFKRSHCPKMYSCNRCNKKSFSVLADLRSHLKHCGESKWRCSCGTSFSRKDKLFGHMALFEGHMPAVENGDEKSVLSAAAVAAATMEEDEHEDEDGIGKEEENGMFEGLFQGFGSIGEYCLQDVLSCSFICNKVFGLNIHC* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7randomg1 383 Pfam Zinc finger, C2H2 type 169 190 IPR013087 -
Vvi7randomg1 383 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 147 374 IPR044300 GO:0010044|GO:0010447
Vvi7randomg1 383 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 48 121 IPR044300 GO:0010044|GO:0010447
Vvi7randomg1 383 SMART c2h2final6 281 305 IPR013087 -
Vvi7randomg1 383 SMART c2h2final6 215 248 IPR013087 -
Vvi7randomg1 383 SMART c2h2final6 253 275 IPR013087 -
Vvi7randomg1 383 SMART c2h2final6 168 190 IPR013087 -
Vvi7randomg1 383 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 48 121 - -
Vvi7randomg1 383 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 147 374 - -
Vvi7randomg1 383 Gene3D Classic Zinc Finger 168 191 - -
Vvi7randomg1 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Vvi7randomg1 383 SUPERFAMILY beta-beta-alpha zinc fingers 165 191 IPR036236 -
Vvi7randomg1 383 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
Vvi7randomg1 383 Gene3D Classic Zinc Finger 251 301 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15087 PF00096 zf-C2H2 0.00017 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7randomg1 - - vvi:100243798 656.751