Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7randomg12 ATGCCAAAATCAGTGGCAAGGAGGCTTGAAAAGCTTCAAAGAGACTTTTTGTGGGAAGGGGCCAATGGGGGGAAAAAAGCACACTTAGTCAAGTGGGAGGTGGTGTGTGCGGATAAAGAAAAGGGAGGGTTGGGATTAAGGAAGCTTGCTTGTTTGAACAAAGCCTTACTAGGCAAATGGATATGGAGGTTTGCGCGTGCTAAGGAGGATATTTGGAAGAAGGTGCTTGAGGCAAAGTATGGGCAAGAGGACTTTGGATGGAGGACAAGGAAGGCAAATGGGGTGTTTGGAGTAGGGGTTTGGAAGGAGATCTTGAAGGAGTTTGCTTGGTGTTGGGAAAATATGGTGTTCAAGGTGGGAAAAGGCAATAAAATCAGATTTTGGATAGATCCTTGGTGCGGGAATAATGTGCCGTCCCAAAGCTTCCCGAATCTTTTTTCCATGGCTGCCCAAAGGAATGTCACAGTGGAGGAAATGTGGGATCAGAATTTTGGTCAAGGAGGGTGGAATTTAAGGTTTTTAAGGGCCTTTAATGATTGGGAGTTGGATATGGTGGGCAACTTGTTGGTTGAGTTCAGGGAGCATAGAGTTACATTGGAGGAACACTCGGTGATTTGGAAGGAAGGAGGAGACGGGCTGTTTAGAGTCAAGAGAGCGTACAGTGTGTTGGCAAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTGTTGAGGTACTTTAGAAAAGATGGCCATAACTGGAGGAAGAAAAAAGATGGGAAGACAGTGAAGGAAGCTCATGAGAGGCTCAAGGCTGGAAGCATTGATGTTTTGCATTGCTACTATGCCCATGGAGAAGATAATGAAAACTTTCAAAGACGCAGCTATTGGATGCTTGAAGAGGAGCTCTCACACATAGTTCTTGTCCACTACCGGGAAGTAAAGGGAAATAGGACAAGCTTTAATCGCATTAAAGAGACTGAAGGAGCTTTAATCAATTCCCAAGAAACAGAAGAAGTTGTACCCAATTCTGAGACGGACTGTTCTGTGTCTTCTAGTTTTCCCATGAATAGTTACCAAATGGCTTCACAAACCACTGACACAACAAGCCTGAACAGCGCTCAAGCATCAGAATATGAAGATGCTGAGTCAGCATATAATCACCAAGCCAGTTCCAGACTCCACTCTTTTCTTGAGCCTGTGATGGAGAAGGGTGATGCACTTACTGCTCCTTACTACCCTGCACCATTTTCAAATGATTACCAAGGAAAGTTGGACATTCCTGGGGCTGATTTTACCTCACTTGCTCAAGAAAGTAGCAGCAAGGATTCCAACAGTGTTGGTATATCATATGAGCTTCCAAAAAATCTTGACTTCCCATCATGGGAAGATGTCTTGGAAAATTGTAATGCTGGAGTTCAATCTATGCCTTCTCAGACACCATTTTCATCTACACGAGCTGATACTATGGGTATCATTCCTAAACAAGAAAATGAGATTTTGATGCAGCTTTTGACAGACAGCTTTAGTAGAAAGCAAGAGTTTGGGAGTGATCCACAAGGTCAAGACGAGTGGCAGACTTCTGAAGGGTATTCTGCACATTTATCTAAGTGGCCTGGGGATCAGAAGTTGCATTCAGACTCAGCATATGGTCTCTCAACTAGGTTTGACATACAGGAAGCCAATTGTGTGGATTTACTGAATTCTTTGGAGCCTGGACATGCATATCCTGATGGGCAGAAGGCCAACTATTCCTCTGCTTTAAAACAGCCTTTGCTAGATAGCTCTCTAACAGAGGAAGGTCTGAAGAAGGTTGACAGCTTCAACCGATGGATGAGTAAAGAACTAGGAGACGTTAATGAGTCACATATGCAGTCCAGGCTGTCCAGCTCTGCAGCCTACTGGGATACTGTTGAGAGTGAAAATGGAGTTGATGAGTCTAGCATTTCTCCTCAAGGACACTTGGACACCTATATGCTGGGTCCCTCCCTTTCCCAGGATCAGCTTTTCAGCATAATTGATTTCTCACCTAACTGGGCTTACGCGGGCTCAGAAGTCAAGGTCCTCATTATGGGAAAATTCTTGAAGGGCCAACAGGATGCAGAAAAATGTAAATGGTCATGTATGTTTGGTGAAGTAGAAGTTCCAGCTGAGGTCATATCAGATGGTGTTCTTCGTTGCCATACTCCCATACACAAAGCTGAAAGGGTTCCTTTTTATGTTACATGCTCCAATAGGTTAGCTTGTAGTGAAGTACGAGAATTTGAATACCGTGTCAACCATATTCGTGATGTGGATACTGCAGATGTCTCTAGTGGCAGTACAAGTGAAATTCTCCTTCATATGAGATTTGTAAAACTATTGTCTTTGGCCCCTTCCTCAAATTCTGGGCTGAGCAATGAGGGTGATAGATTCCCTTTGAACAGCAAAATCAATTCACTAATGGAAGAAGACAATGATGAATGGGAGCAGATGTTAATGCTTACTTCAGAGGAGTTCTCACCTGAAAAGGCTAAGGAGCAGCTGCTTCAGAAGTTGCTGAAGGAGAAGTTGCACGTGTGGCTCCTTCAGAAGGCAGCTGAAGGTGGAAAAGGTCCAAATGTATTAGATGAGGATGGCCAAGGGGTGCTTCATTTTGCAGCTGCTCTTGGCTATGATTGGGCTATACCACCCACAACTGCTGCAGGTGTTAGTGTCAATTTTCGTGATGTGAATGGATGGACTGCACTTCACTGGGCAGCATTTTGTGGCAGAGAGCGGACTGTTCCTTTCCTCATCTCTCAAGGTGCTGCTCCTGGAGCATTGACAGATCCAACTCCCAAATATCCTGCAGGCAGAACGCCTGCAGACTTAGCTTCTAGCAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTGCTTTAAGTGCACACCTTCAATCTCTTCATTTGAAAGAAACCAAGGAAGCTGATGCTGCGGAAATTTCTGGAATAAAAGCTGTACAAACGATTTCTGAACGGAGCCCAACTCCAATCAGCACTGGGGATCTCCCCCTGAAAGATTCATTAGCTGCCGTCTGTAATGCTACTCAAGCTGCTGCTCGTATTCATCAAGTCTTCAGGGTTCAGTCATTCCAAAAGAAGCAGCAAAAAGAGTATGATGATGGAAAATTTGGAATGTCAGATGAGCATGCTCTCTCACTTATTGCTGTTAAAAGCAGGCTAGGACAACATGATGAACCTGTGCATGCTGCTGCAACACGGATACAAAATAAGTTCCGCAGTTGGAAGGGAAGAAAAGACTTTTTGATAATCAGGCAGCGGATTGTTAAAATTCAGGCCCATGTAAGAGGCCACCAGGTCAGGAAAAACTATAGAAAGATAATCTGGTCTGTAGGAATTTTGGAGAAGGTAATTTTGCGCTGGAGACGGAAAGGGAGCGGTTTGCGAGGTTTCAAACCAGAAACACACACTGAGGGCACAAGCATGCGAGACATATCCTCGAAGGAGGATGATTATGATTTCCTGAAAGAGGGAAGAAAGCAAACAGAGGAAAGATTGCAAAAGGCCCTTGCTAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCTAGAGATCAATACCGTAGGCTGCTGAATGTTGTCACTGAGATCCAGGAAACCAAGGTTGTGTACGACAGAGCTCTCAACAGTTCGGAAGAAGCGGCTGATTTTGATGACCTGATTGATCTCCAAGCATTGTTGGATGATGACACCTTCATGCCTACAGCATCTTGA 3732 44.48 MPKSVARRLEKLQRDFLWEGANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGKWIWRFARAKEDIWKKVLEAKYGQEDFGWRTRKANGVFGVGVWKEILKEFAWCWENMVFKVGKGNKIRFWIDPWCGNNVPSQSFPNLFSMAAQRNVTVEEMWDQNFGQGGWNLRFLRAFNDWELDMVGNLLVEFREHRVTLEEHSVIWKEGGDGLFRVKRAYSVLASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEDNENFQRRSYWMLEEELSHIVLVHYREVKGNRTSFNRIKETEGALINSQETEEVVPNSETDCSVSSSFPMNSYQMASQTTDTTSLNSAQASEYEDAESAYNHQASSRLHSFLEPVMEKGDALTAPYYPAPFSNDYQGKLDIPGADFTSLAQESSSKDSNSVGISYELPKNLDFPSWEDVLENCNAGVQSMPSQTPFSSTRADTMGIIPKQENEILMQLLTDSFSRKQEFGSDPQGQDEWQTSEGYSAHLSKWPGDQKLHSDSAYGLSTRFDIQEANCVDLLNSLEPGHAYPDGQKANYSSALKQPLLDSSLTEEGLKKVDSFNRWMSKELGDVNESHMQSRLSSSAAYWDTVESENGVDESSISPQGHLDTYMLGPSLSQDQLFSIIDFSPNWAYAGSEVKVLIMGKFLKGQQDAEKCKWSCMFGEVEVPAEVISDGVLRCHTPIHKAERVPFYVTCSNRLACSEVREFEYRVNHIRDVDTADVSSGSTSEILLHMRFVKLLSLAPSSNSGLSNEGDRFPLNSKINSLMEEDNDEWEQMLMLTSEEFSPEKAKEQLLQKLLKEKLHVWLLQKAAEGGKGPNVLDEDGQGVLHFAAALGYDWAIPPTTAAGVSVNFRDVNGWTALHWAAFCGRERTVPFLISQGAAPGALTDPTPKYPAGRTPADLASSNGHKGIAGYLAESALSAHLQSLHLKETKEADAAEISGIKAVQTISERSPTPISTGDLPLKDSLAAVCNATQAAARIHQVFRVQSFQKKQQKEYDDGKFGMSDEHALSLIAVKSRLGQHDEPVHAAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYRKIIWSVGILEKVILRWRRKGSGLRGFKPETHTEGTSMRDISSKEDDYDFLKEGRKQTEERLQKALARVKSMVQYPEARDQYRRLLNVVTEIQETKVVYDRALNSSEEAADFDDLIDLQALLDDDTFMPTAS* 1244
       

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7randomg12 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1063 1118 IPR027417 -
Vvi7randomg12 1243 MobiDBLite consensus disorder prediction 326 377 - -
Vvi7randomg12 1243 ProSiteProfiles IQ motif profile. 1091 1115 IPR000048 GO:0005515
Vvi7randomg12 1243 Pfam Ankyrin repeats (3 copies) 869 960 IPR002110 GO:0005515
Vvi7randomg12 1243 ProSiteProfiles Ankyrin repeat profile. 897 929 IPR002110 GO:0005515
Vvi7randomg12 1243 ProSiteProfiles Ankyrin repeat region circular profile. 897 922 - -
Vvi7randomg12 1243 Pfam IQ calmodulin-binding motif 1069 1088 IPR000048 GO:0005515
Vvi7randomg12 1243 Pfam IQ calmodulin-binding motif 1093 1112 IPR000048 GO:0005515
Vvi7randomg12 1243 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 172 1198 - -
Vvi7randomg12 1243 SMART ANK_2a 897 926 IPR002110 GO:0005515
Vvi7randomg12 1243 SMART ANK_2a 936 965 IPR002110 GO:0005515
Vvi7randomg12 1243 Gene3D - 811 1070 IPR036770 -
Vvi7randomg12 1243 Gene3D Immunoglobulins 657 753 IPR013783 -
Vvi7randomg12 1243 SUPERFAMILY E set domains 664 750 IPR014756 -
Vvi7randomg12 1243 Pfam CG-1 domain 224 305 IPR005559 GO:0003677
Vvi7randomg12 1243 ProSiteProfiles IQ motif profile. 1069 1097 IPR000048 GO:0005515
Vvi7randomg12 1243 Coils Coil 1152 1179 - -
Vvi7randomg12 1243 Pfam IPT/TIG domain 664 749 IPR002909 -
Vvi7randomg12 1243 Gene3D - 1071 1115 - -
Vvi7randomg12 1243 ProSiteProfiles CG-1 DNA-binding domain profile. 184 312 IPR005559 GO:0003677
Vvi7randomg12 1243 SMART iq_5 1067 1089 IPR000048 GO:0005515
Vvi7randomg12 1243 SMART iq_5 1090 1112 IPR000048 GO:0005515
Vvi7randomg12 1243 SUPERFAMILY Ankyrin repeat 849 958 IPR036770 -
Vvi7randomg12 1243 SMART CG_1_2 188 307 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7randomg12 K21596 CAMTA; calmodulin-binding transcription activator - vvi:100247418 1989.16
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7randomg12 . 230 1239 CAMTA Transcription Factor Family AT2G22300 52.3 1.0e-253 873.6
Vvi1g1270 . 4 955 CAMTA Transcription Factor Family AT1G67310 52.4 2.0e-260 896.0
Vvi5g92 . 28 915 CAMTA Transcription Factor Family AT3G16940 54.4 6.2e-265 910.6
Vvi5g92 . 7 642 CAMTA Transcription Factor Family AT4G16150 51.8 6.7e-191 664.8
Vvi7randomg12 . 230 1239 CAMTA Transcription Factor Family AT2G22300 52.3 1.0e-253 873.6
Vvi1g1270 . 4 955 CAMTA Transcription Factor Family AT1G67310 52.4 2.0e-260 896.0
Vvi5g92 . 7 642 CAMTA Transcription Factor Family AT4G16150 51.8 6.7e-191 664.8
Vvi5g92 . 28 915 CAMTA Transcription Factor Family AT3G16940 54.4 6.2e-265 910.6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15088 PF12796 Ank_2 7.50E-07 CL0465 Vvi TF