Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi7randomg52 | ATGGATGTTCCTTCAGACCCTCATCACCATCATCAAACACAGCCTCCTCCTACTCTTACAGCTGTTTCTACTCCAGTCTCAACTGGCTTTTTTCCTTCTCCTTCTCACCTTAACTACTCAGGCATTTACTATGGGGTTGAAGGAGAAAATGGTGGCTTCTATTCTCCCTTGTCTGTGATGCCACTCAAGTCTGATGGGTCTCTTTGCATAATGGAAGCTCTCAGCAGGTCACAACCGCAAGGGATGGTGCCAACTTCAACTCCGAAGCTGGAGGACTTCTTTGGTGGTGCAACCATGGGGACCCATCACTATGAAAGCAATGACAGAGAAGCAATGGCTCTTAGCTTAGATAGCATGTATTACCATCAGAACCCTGAGAATGAGCCCAACAAGACCAAGGAAACCCAGCTTGCAGCAGATGGCAATCTCCAGCTCCCAAATATGGCAGACACTGGGCTGCCTGGCATGAAGAACTGGGTTTCCAGGAACTATCCAACAAATGAATCACTGGAGCACAAGATGATTGGTTGCATGAGTGACAATGGAGGAGAATCTGGGTCTATGAGTACAATGGGGTATGGGGATTTACAGTCTCTGAGCTTGTCCATGAGCCCTGGCTCCCAATCAAGCTGTGTTACAGGTTCACAACAAATCTCACCGACTGTGACCGAGTGTGTGGCTATGGATACAAAGAAAAGAGGTCCTGACAAAGTGGATCAGAAGCAAATTGTTCATAGGAAATCCTTAGATACGTTTGGGCAGAGAACCTCACAGTATAGAGGTGTCACAAGGCATAGATGGACAGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGGCAAAGCAGGAAAGGAAGGCAAGTTTATCTTGGGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCTAGGGGGGCTTCCATGTATAGAGGAGTGACAAGACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCAGCACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCAATAAAATTCCGTGGGGTAAATGCCGTAACCAACTTTGATATAACAAGGTACGATGTGGAGCGGATCATGGCGAGCAGTAACCTTCTTGCTGGAGAACTTGCTAAGCGAAACAAGGACATGGAATCCACCAGTGAGGCTAAGAATCTCAACCCTTCTGTTCATACCAGCAGTGGGGAAGCCATTCTCTCCCAGGAGAACAATCAAAGTGAATCAGGATGGAAAATGGTGCTCTATCACCTTCCTATGCTCTTTGCAATTCCCCCATCAGCACCCAAGTTCTTCGCCACTCCAGCAAATACTGTGAATTCCTGGATCCCATCAGCCCAGCTGAGGCCTGCAATCCCCATGCCTCACATGCCTGTCTTTGCGGCTTGGACTGATGGCTAA | 1602 | 47.07 | MDVPSDPHHHHQTQPPPTLTAVSTPVSTGFFPSPSHLNYSGIYYGVEGENGGFYSPLSVMPLKSDGSLCIMEALSRSQPQGMVPTSTPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHQNPENEPNKTKETQLAADGNLQLPNMADTGLPGMKNWVSRNYPTNESLEHKMIGCMSDNGGESGSMSTMGYGDLQSLSLSMSPGSQSSCVTGSQQISPTVTECVAMDTKKRGPDKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQQELENMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVERIMASSNLLAGELAKRNKDMESTSEAKNLNPSVHTSSGEAILSQENNQSESGWKMVLYHLPMLFAIPPSAPKFFATPANTVNSWIPSAQLRPAIPMPHMPVFAAWTDG* | 534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi7randomg52 | 533 | ProSiteProfiles | AP2/ERF domain profile. | 258 | 324 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 132 | 474 | - | - | |
Vvi7randomg52 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 17 | 133 | - | - | |
Vvi7randomg52 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 132 | 474 | - | - | |
Vvi7randomg52 | 533 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 17 | 133 | - | - | |
Vvi7randomg52 | 533 | ProSiteProfiles | AP2/ERF domain profile. | 360 | 418 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | PRINTS | Ethylene responsive element binding protein signature | 259 | 270 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | PRINTS | Ethylene responsive element binding protein signature | 400 | 420 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | SUPERFAMILY | DNA-binding domain | 257 | 326 | IPR016177 | GO:0003677 | |
Vvi7randomg52 | 533 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vvi7randomg52 | 533 | Gene3D | AP2/ERF domain | 257 | 326 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | Gene3D | AP2/ERF domain | 360 | 420 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | SUPERFAMILY | DNA-binding domain | 359 | 419 | IPR016177 | GO:0003677 | |
Vvi7randomg52 | 533 | Pfam | AP2 domain | 258 | 316 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | Pfam | AP2 domain | 361 | 410 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | CDD | AP2 | 359 | 420 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | CDD | AP2 | 257 | 324 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | SMART | rav1_2 | 360 | 424 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi7randomg52 | 533 | SMART | rav1_2 | 258 | 330 | IPR001471 | GO:0003700|GO:0006355 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15091 | PF00847 | AP2 | 9.30E-14 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi7randomg52 | K09285 | - | vvi:100257805 | 943.34 |