Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7randomg52 ATGGATGTTCCTTCAGACCCTCATCACCATCATCAAACACAGCCTCCTCCTACTCTTACAGCTGTTTCTACTCCAGTCTCAACTGGCTTTTTTCCTTCTCCTTCTCACCTTAACTACTCAGGCATTTACTATGGGGTTGAAGGAGAAAATGGTGGCTTCTATTCTCCCTTGTCTGTGATGCCACTCAAGTCTGATGGGTCTCTTTGCATAATGGAAGCTCTCAGCAGGTCACAACCGCAAGGGATGGTGCCAACTTCAACTCCGAAGCTGGAGGACTTCTTTGGTGGTGCAACCATGGGGACCCATCACTATGAAAGCAATGACAGAGAAGCAATGGCTCTTAGCTTAGATAGCATGTATTACCATCAGAACCCTGAGAATGAGCCCAACAAGACCAAGGAAACCCAGCTTGCAGCAGATGGCAATCTCCAGCTCCCAAATATGGCAGACACTGGGCTGCCTGGCATGAAGAACTGGGTTTCCAGGAACTATCCAACAAATGAATCACTGGAGCACAAGATGATTGGTTGCATGAGTGACAATGGAGGAGAATCTGGGTCTATGAGTACAATGGGGTATGGGGATTTACAGTCTCTGAGCTTGTCCATGAGCCCTGGCTCCCAATCAAGCTGTGTTACAGGTTCACAACAAATCTCACCGACTGTGACCGAGTGTGTGGCTATGGATACAAAGAAAAGAGGTCCTGACAAAGTGGATCAGAAGCAAATTGTTCATAGGAAATCCTTAGATACGTTTGGGCAGAGAACCTCACAGTATAGAGGTGTCACAAGGCATAGATGGACAGGTAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGGCAAAGCAGGAAAGGAAGGCAAGTTTATCTTGGGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGTTGGAAAATTATCAACAAGAACTTGAAAATATGAAGAACATGACCAGACAGGAGTATGTTGCCCACTTGAGAAGGAAAAGCAGTGGCTTTTCTAGGGGGGCTTCCATGTATAGAGGAGTGACAAGACATCACCAACATGGACGGTGGCAAGCTCGAATTGGCAGAGTTGCAGGGAACAAGGACCTTTATCTTGGGACATTCAGCACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCAATAAAATTCCGTGGGGTAAATGCCGTAACCAACTTTGATATAACAAGGTACGATGTGGAGCGGATCATGGCGAGCAGTAACCTTCTTGCTGGAGAACTTGCTAAGCGAAACAAGGACATGGAATCCACCAGTGAGGCTAAGAATCTCAACCCTTCTGTTCATACCAGCAGTGGGGAAGCCATTCTCTCCCAGGAGAACAATCAAAGTGAATCAGGATGGAAAATGGTGCTCTATCACCTTCCTATGCTCTTTGCAATTCCCCCATCAGCACCCAAGTTCTTCGCCACTCCAGCAAATACTGTGAATTCCTGGATCCCATCAGCCCAGCTGAGGCCTGCAATCCCCATGCCTCACATGCCTGTCTTTGCGGCTTGGACTGATGGCTAA 1602 47.07 MDVPSDPHHHHQTQPPPTLTAVSTPVSTGFFPSPSHLNYSGIYYGVEGENGGFYSPLSVMPLKSDGSLCIMEALSRSQPQGMVPTSTPKLEDFFGGATMGTHHYESNDREAMALSLDSMYYHQNPENEPNKTKETQLAADGNLQLPNMADTGLPGMKNWVSRNYPTNESLEHKMIGCMSDNGGESGSMSTMGYGDLQSLSLSMSPGSQSSCVTGSQQISPTVTECVAMDTKKRGPDKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQQELENMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVERIMASSNLLAGELAKRNKDMESTSEAKNLNPSVHTSSGEAILSQENNQSESGWKMVLYHLPMLFAIPPSAPKFFATPANTVNSWIPSAQLRPAIPMPHMPVFAAWTDG* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7randomg52 533 ProSiteProfiles AP2/ERF domain profile. 258 324 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 132 474 - -
Vvi7randomg52 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 17 133 - -
Vvi7randomg52 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 132 474 - -
Vvi7randomg52 533 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 17 133 - -
Vvi7randomg52 533 ProSiteProfiles AP2/ERF domain profile. 360 418 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 PRINTS Ethylene responsive element binding protein signature 259 270 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 PRINTS Ethylene responsive element binding protein signature 400 420 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 SUPERFAMILY DNA-binding domain 257 326 IPR016177 GO:0003677
Vvi7randomg52 533 MobiDBLite consensus disorder prediction 1 23 - -
Vvi7randomg52 533 Gene3D AP2/ERF domain 257 326 IPR036955 GO:0003700|GO:0006355
Vvi7randomg52 533 Gene3D AP2/ERF domain 360 420 IPR036955 GO:0003700|GO:0006355
Vvi7randomg52 533 SUPERFAMILY DNA-binding domain 359 419 IPR016177 GO:0003677
Vvi7randomg52 533 Pfam AP2 domain 258 316 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 Pfam AP2 domain 361 410 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 CDD AP2 359 420 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 CDD AP2 257 324 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 SMART rav1_2 360 424 IPR001471 GO:0003700|GO:0006355
Vvi7randomg52 533 SMART rav1_2 258 330 IPR001471 GO:0003700|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15091 PF00847 AP2 9.30E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7randomg52 K09285 - vvi:100257805 943.34