Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi7randomg53 ATGGATACTGATGGTAGTGGTGATTCTGGTTTTGAACATAAAGATGGGAGCCTTCTGGATTGCCCATCGTTGGGGATTTTCACATCTCTGTCATCTTTAAATGGAGTAACTTCAATCTTCACTGGTGATTACGACCCACCTGTTCCACTAGCACACAATGCAGACATTATAGGTCTTCCTCCCTTGAAAACTCACGATCAGATTGATGATTTATATGCTGGTAATGCACTAGAAAATCAAGGAATGAGTAGCACTATCCACCTCACTCAGTATTCCTCAGATCCCAGATTTGTTGAGCTAGTGCCTAACTTTCCCCACTTTAGCACTGCGGGCTTCTCAGAGATGGTTACTCCCCGTTGCCTGCCTAAGTGCCACAACATTGGTTGTCCTCCCGATCATCCTCTAGAGAAGAATGGCACCAGAAAAACTTCAAATTTACAAAACAAAACTAATAATTGTGCCCAGATGGAGGGGTGCCAGATAGCAGATGATGGAACCATGGAACTGTCACCTATTGAAAAGAAAAGGAAAAGATTGGCCGATGATCGGTCTCAATTTGCGCATTTAAAGAATATGGAAGCAGCACAACCGAAGGATGAATGCCTAGGAAGGCAAGATGAGAGGAAACAGAAAGCTGAACAAAAAATAGTTGCAAATAATTGTGGTAAACTTATAGGTGCAGAAGTTAAAATGAGTTCCCAGACAGGGGAAGCTCCAAAAGAAGATTACATTCATGTGAGAGCAAAGCGTGGCCAGGCGACCAATAGTCATAGCCTTGCAGAAAGAGTGAGAAGAGAAAGGATTAGCGAGAGGATGAAATTTCTTCAAGATCTTGTTCCGGGATGCAATAAGATTACTGGAAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCTACTGTCTACCCTGAAATGAATGTTCAGATAGAAAGGATTCTATCAAGTGATATTCATCATTCAAAAGGTGGGACTGCCCCTATTCTAGGGTTTGGTCCTGGAATGAACTCTGCTTATCCAATCCCACAAGTAACTTTGCAAGCAATCTCACCAGCCATTGAGAGCTCAACCCTTCAATCGTCTCCCATGTCTCCAATGCCAAATGTATGGGATAATGAGCTCCAAGGTATTAAACAGATGGGCTTTACTTCAACTGCAGACCTAGAGAATTTGGAAACAAGTGGTTGCACGAAAGTACAGCTATAG 1248 42.39 MDTDGSGDSGFEHKDGSLLDCPSLGIFTSLSSLNGVTSIFTGDYDPPVPLAHNADIIGLPPLKTHDQIDDLYAGNALENQGMSSTIHLTQYSSDPRFVELVPNFPHFSTAGFSEMVTPRCLPKCHNIGCPPDHPLEKNGTRKTSNLQNKTNNCAQMEGCQIADDGTMELSPIEKKRKRLADDRSQFAHLKNMEAAQPKDECLGRQDERKQKAEQKIVANNCGKLIGAEVKMSSQTGEAPKEDYIHVRAKRGQATNSHSLAERVRRERISERMKFLQDLVPGCNKITGKAVMLDEIINYVQSLQRQVEFLSMKLATVYPEMNVQIERILSSDIHHSKGGTAPILGFGPGMNSAYPIPQVTLQAISPAIESSTLQSSPMSPMPNVWDNELQGIKQMGFTSTADLENLETSGCTKVQL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi7randomg53 415 Gene3D - 249 324 IPR036638 GO:0046983
Vvi7randomg53 415 SMART finulus 258 308 IPR011598 GO:0046983
Vvi7randomg53 415 Pfam Helix-loop-helix DNA-binding domain 255 303 IPR011598 GO:0046983
Vvi7randomg53 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 320 IPR036638 GO:0046983
Vvi7randomg53 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 302 IPR011598 GO:0046983
Vvi7randomg53 415 CDD bHLH_AtBPE_like 242 327 - -
Vvi7randomg53 415 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 414 IPR024097 GO:0006355
Vvi7randomg53 415 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 414 - -
Vvi7randomg53 415 Coils Coil 412 415 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15092 PF00010 HLH 4.30E-06 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi7randomg53 - - vvi:100853160 842.802