Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1012 ATGGGTTCATTTCCTGGTAGTTGTGAAATTGTTGAATCATCGGAAGACCCAAGTTTGGCTCAACTTTCTAGAGGAATTCATCGACCAAAATCTGGAGTAAAAGTGGATGACAAAGTTAGAAAGCCTCCTATACTGAAACTGGGACATGACAGTTCTCTAGAAGATGATCTTAATCGGATTTTTGAGGCAATTAACCTAAAAAATGCATCTAAGGTTTGGGGTCTTCCCCACCAAGTTGGAACAGACTCCCCATCGAAGAATGCGTTAAAAAAGCCAATTACAGTCAGTGGTTCTCATTCACCACGAATTGGGATTTCTGAGCCTGCAACTCTGAAGCAGGCACTAAGGGGACTCTGCATCTCCCAGGCATCTGAAATGGCTGCTGTGAAAAGGTTATCAAAGTCGGGAAGTTATTCAGGGGCGTCTGAAGCTGGAAGGATTAAGAGTTTGTTTAGTACTGTCGTTGTTGAAGCCAGACAACCTGGTATGTCTCTAGGCAAGGGTGGTATTGCAGAAATCTCTCTGTTTCCAGAAGAGAGCACATCAAATGCTTCTGAGAAGGTAACTCATAATCAAACATCAAAGACAGTGCAGAAAGAAAAGCATACGTCTGTAACTGCTCTATCTGGTGCAAACACCGATGATAACATGCTGGAGCTAGGTACCACTGGTCATGCCTCAACCAAATCGGCAAACAGAGCATCAGCATTAAAGCCAGGGCGGAAAGGCAGGTTGCAAAATGTACCTTCTAGCTCGGTCAACAGTAGTAAGGCAAGCAAGTCAACAAAGAACACCCAACGTGTAGTCAAACCAATTCTCAGAAACAAGAATTTTGTAAAGAAAAAAGTAAAGCAGGATTCAAATTCTGCCACCTCCACTTCTAATACATATTCTCCCACATCCAACTTAAAAAGTCTCAGCACTGAAGCCAGCTTTAGTAATATGAACTCAGTTGCTAACAAACCAGGCATCAGTTCCAATAGTTATAACAGACATAAAGCTATTTTTGTCAAGGCAAACAAGAATGCAAAATCAAGGGAGAAAGGGGAATTGTCTCAGAGCTCTAAAAGTAGCCGTGGTGAGTACAGTAGCAGTACAAGCATCAGCGAAGAGAGCATTCTAAGTGGGTCTAGTTGTGGCAATAGACCTCACATGTCAAAGGATTTAAGATGGGAAGCCATCCGCCAAGTCCAGATGCAGCAAGGAGTTCTAGGATTGAGACACTTCAATCTGTTAAAAAAGCTTGGTGGTGGAGACATTGGGACTGTTTATCTGGCTGAGCTAATTGGTACATGCTGCCTTTTTGCTATAAAGGTCATGGACAATGACTTTTTGGCCAGAAGGAAAAAGATGCCAAGGGCCCAAACTGAAAGAGAAATATTGCGAATGCTGGATCATCCTTTTCTCCCTACGCTCTATGCTCAATTCACATCAGATAATTTGTCATGTTTGGTCATGGAATATTGTCCAGGTGGAGATCTGCATGTCCTTCGGCAGAAGCAGCCTGGTAGGAATTTTCCTGAACAAGCAGCAAGGTTTTATGTTGCTGAAGTCCTCCTTGCTTTGGAATACTTACACATGCTTGGAGTTGTATACCGAGATTTGAAACCAGAAAACATTCTAGTCAGAGAAGATGGTCACATTATGCTCACAGATTTTGATCTGTCACTCAGATGCAATCCTACTGATGCTCGATCCAACTCCTTTGTGGGGACCCATGAATATTTGGCTCCAGAAATCATCAAAGGAGAGGGCCATGGGAGTGCGGTTGATTGGTGGACATTTGGAGTCTTTCTTTACGAGCTTCTATATGGAAAGACACCATTTAAAGGTTCTGGAAATGATGAAACATTGGCGAATGTGGTTTTGCAGAGCCTCAAATTTCCAGACAACCCAATCATTAGTTTTCAGGCAAGGGATCTCATCAGAGGGCTGTTGATGAAGGAGCCCGAGAATCGATTGGGGTCAGAGCGGGGGGCTGCAGAGATCAAGCAGCACCCGTTTTTTGAGGGCCTGAATTGGGCACTTATTCGCTGTACTATTCCTCCGGAGTTACCTGAGTTCGGTGAGTTTGGGCTCATGACAGTGGCTTCCCAGCAGAAGGAGAGCAAGTATCTGGAGTTTGAATTGTTCTAG 2136 43.73 MGSFPGSCEIVESSEDPSLAQLSRGIHRPKSGVKVDDKVRKPPILKLGHDSSLEDDLNRIFEAINLKNASKVWGLPHQVGTDSPSKNALKKPITVSGSHSPRIGISEPATLKQALRGLCISQASEMAAVKRLSKSGSYSGASEAGRIKSLFSTVVVEARQPGMSLGKGGIAEISLFPEESTSNASEKVTHNQTSKTVQKEKHTSVTALSGANTDDNMLELGTTGHASTKSANRASALKPGRKGRLQNVPSSSVNSSKASKSTKNTQRVVKPILRNKNFVKKKVKQDSNSATSTSNTYSPTSNLKSLSTEASFSNMNSVANKPGISSNSYNRHKAIFVKANKNAKSREKGELSQSSKSSRGEYSSSTSISEESILSGSSCGNRPHMSKDLRWEAIRQVQMQQGVLGLRHFNLLKKLGGGDIGTVYLAELIGTCCLFAIKVMDNDFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQPGRNFPEQAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCNPTDARSNSFVGTHEYLAPEIIKGEGHGSAVDWWTFGVFLYELLYGKTPFKGSGNDETLANVVLQSLKFPDNPIISFQARDLIRGLLMKEPENRLGSERGAAEIKQHPFFEGLNWALIRCTIPPELPEFGEFGLMTVASQQKESKYLEFELF* 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17534683 17542341 - Vvi8g1012 Vvi8g1012 791235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1012 711 MobiDBLite consensus disorder prediction 77 101 - -
Vvi8g1012 711 MobiDBLite consensus disorder prediction 284 304 - -
Vvi8g1012 711 CDD STKc_phototropin_like 407 687 - -
Vvi8g1012 711 MobiDBLite consensus disorder prediction 339 381 - -
Vvi8g1012 711 MobiDBLite consensus disorder prediction 180 234 - -
Vvi8g1012 711 Gene3D Phosphorylase Kinase; domain 1 408 492 - -
Vvi8g1012 711 SUPERFAMILY Protein kinase-like (PK-like) 384 686 IPR011009 -
Vvi8g1012 711 MobiDBLite consensus disorder prediction 180 304 - -
Vvi8g1012 711 MobiDBLite consensus disorder prediction 245 271 - -
Vvi8g1012 711 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 560 704 - -
Vvi8g1012 711 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 560 - -
Vvi8g1012 711 Pfam Protein kinase domain 410 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1012 711 MobiDBLite consensus disorder prediction 340 354 - -
Vvi8g1012 711 SMART serkin_6 409 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1012 711 ProSiteProfiles Protein kinase domain profile. 409 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1012 711 MobiDBLite consensus disorder prediction 80 101 - -
Vvi8g1012 711 Gene3D Transferase(Phosphotransferase) domain 1 493 682 - -
Vvi8g1012 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vvi8g1012 711 MobiDBLite consensus disorder prediction 355 381 - -
Vvi8g1012 711 PANTHER FLIPPASE KINASE 1-RELATED 560 704 - -
Vvi8g1012 711 PANTHER FLIPPASE KINASE 1-RELATED 1 560 - -
Vvi8g1012 711 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1012 Vvi13g657 ECH
Vvi6g1179 Vvi8g1012 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76781 PF00069 Pkinase 1.90E-64 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1012 - K08286 vvi:100246067 990.334