Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1028 ATGAACCCATTTGAACGCCAAGTTACCAGCTCTTTCTCTGTAGAGTCTTCGTCGTCATCATCATTTTCATCCTCAACACGTGCACCAGGTAGTTCGTCGCAAACCCATGAAGCAGGAAGCAGCAGCCAGAAGCGCAAAGCCGGGAGGAAGAAGTTCAAGGAGACCCGACACCCATTGTACAAAGGCGTTCGACAAAGGAACGGCAAGTGGGTGTGCGAACTGCGGCAGCCTCGCAAAAGGAATCGAATATGGCTGGGGACTTTCCCTTGCCCGGACATGGCTGCTAGGGCATATGATGTAGCTGCTTTGGCTATTAAGGGAGACTCTGCTTCCCTCAATTTCCCTGAATCCGTGAGTCAGTTGCCTCACGAAGATTCAGACCCTTGCCAACTATTTGTGGATGAGGAGGCTTTGTTTAATATGCCGACTCTACTGGACAGCATGGCGGAAGGCTTGATCCTTACGCCGCTGGCACTGAAGAAAGGGTTCAATTGGAACAGCATTAAAGAGGCGGAAGACTTCACTCTCTGGACTGACTAA 540 50.74 MNPFERQVTSSFSVESSSSSSFSSSTRAPGSSSQTHEAGSSSQKRKAGRKKFKETRHPLYKGVRQRNGKWVCELRQPRKRNRIWLGTFPCPDMAARAYDVAALAIKGDSASLNFPESVSQLPHEDSDPCQLFVDEEALFNMPTLLDSMAEGLILTPLALKKGFNWNSIKEAEDFTLWTD* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17765903 17766542 + Vvi8g1028 Vvi8g1028 791251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1028 179 MobiDBLite consensus disorder prediction 1 41 - -
Vvi8g1028 179 SMART rav1_2 59 121 IPR001471 GO:0003700|GO:0006355
Vvi8g1028 179 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 126 178 - -
Vvi8g1028 179 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 48 126 - -
Vvi8g1028 179 MobiDBLite consensus disorder prediction 1 58 - -
Vvi8g1028 179 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Vvi8g1028 179 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677
Vvi8g1028 179 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Vvi8g1028 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 48 126 - -
Vvi8g1028 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 126 178 - -
Vvi8g1028 179 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Vvi8g1028 179 ProSiteProfiles AP2/ERF domain profile. 59 115 IPR001471 GO:0003700|GO:0006355
Vvi8g1028 179 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vvi8g1028 179 PRINTS Ethylene responsive element binding protein signature 97 117 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1164 Vvi8g1028 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15098 PF00847 AP2 5.90E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1028 - - vvi:100266546 318.546