Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g1030 | ATGCATTATTCAAAGTACGCCACTAACTCCAACTCAAGCGGCAGCGGTGCCAGTGGCAGCAATGCCTCTGTCAATGGAGGTGGTGCTGCTTCCTCTGGTACCGGGCGCCACCCTGTTTACCGCGGAGTGAGGCGTAGGAGCAGCGGGAAATGGGTGTCGGAGATTCGGGAGCCCAAGAAGCCCAATCGCATTTGGCTTGGTACATTTCCAACTCCGGAAATGGCTGCAGTGGCTTATGATGTGGCTGCACTTGCTCTTAAGGGTCAAGATGCTGAGCTTAACTTTCCGAACTCCGCTTCTTCCTTGCCTGTTCCTGCATCCACCTCTCCACGTGACATCCAGGTGGCCGCAGCCTCGGCGGCCGCGGCCGCTGGAGCCGCTGTGGATGCTCTATCTGGGGGTGGAAGTACCATTAGTCCAATAGCACTAGGCAGATCAATGGCTAATGAGTTTGTTGACGAGGATTTGATCTTCGATATGCCCAATCTTCTTGTGAATATGGCAGAAGGGATGCTTCTCAGCCCTCCTCGCTTGGATTTGGCAGGGGAAGATGCCACCGCGGATTTTACAGGAGATCACAGCCTCTGGAATTATCCTTAA | 600 | 54.17 | MHYSKYATNSNSSGSGASGSNASVNGGGAASSGTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPRDIQVAAASAAAAAGAAVDALSGGGSTISPIALGRSMANEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDLAGEDATADFTGDHSLWNYP* | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 17783406 | 17784006 | - | Vvi8g1030 | Vvi8g1030 | 791253 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g1030 | 199 | PRINTS | Ethylene responsive element binding protein signature | 40 | 51 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi8g1030 | 199 | PRINTS | Ethylene responsive element binding protein signature | 78 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi8g1030 | 199 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Vvi8g1030 | 199 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 12 | 199 | - | - | |
Vvi8g1030 | 199 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Vvi8g1030 | 199 | CDD | AP2 | 40 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi8g1030 | 199 | SUPERFAMILY | DNA-binding domain | 39 | 98 | IPR016177 | GO:0003677 | |
Vvi8g1030 | 199 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 | 12 | 199 | - | - | |
Vvi8g1030 | 199 | Gene3D | AP2/ERF domain | 39 | 97 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi8g1030 | 199 | Pfam | AP2 domain | 38 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi8g1030 | 199 | SMART | rav1_2 | 39 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi8g1030 | 199 | ProSiteProfiles | AP2/ERF domain profile. | 39 | 96 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15099 | PF00847 | AP2 | 2.20E-12 | CL0081 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g1030 | - | - | vvi:100261339 | 342.813 |