Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1030 ATGCATTATTCAAAGTACGCCACTAACTCCAACTCAAGCGGCAGCGGTGCCAGTGGCAGCAATGCCTCTGTCAATGGAGGTGGTGCTGCTTCCTCTGGTACCGGGCGCCACCCTGTTTACCGCGGAGTGAGGCGTAGGAGCAGCGGGAAATGGGTGTCGGAGATTCGGGAGCCCAAGAAGCCCAATCGCATTTGGCTTGGTACATTTCCAACTCCGGAAATGGCTGCAGTGGCTTATGATGTGGCTGCACTTGCTCTTAAGGGTCAAGATGCTGAGCTTAACTTTCCGAACTCCGCTTCTTCCTTGCCTGTTCCTGCATCCACCTCTCCACGTGACATCCAGGTGGCCGCAGCCTCGGCGGCCGCGGCCGCTGGAGCCGCTGTGGATGCTCTATCTGGGGGTGGAAGTACCATTAGTCCAATAGCACTAGGCAGATCAATGGCTAATGAGTTTGTTGACGAGGATTTGATCTTCGATATGCCCAATCTTCTTGTGAATATGGCAGAAGGGATGCTTCTCAGCCCTCCTCGCTTGGATTTGGCAGGGGAAGATGCCACCGCGGATTTTACAGGAGATCACAGCCTCTGGAATTATCCTTAA 600 54.17 MHYSKYATNSNSSGSGASGSNASVNGGGAASSGTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPRDIQVAAASAAAAAGAAVDALSGGGSTISPIALGRSMANEFVDEDLIFDMPNLLVNMAEGMLLSPPRLDLAGEDATADFTGDHSLWNYP* 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17783406 17784006 - Vvi8g1030 Vvi8g1030 791253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1030 199 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Vvi8g1030 199 PRINTS Ethylene responsive element binding protein signature 78 98 IPR001471 GO:0003700|GO:0006355
Vvi8g1030 199 MobiDBLite consensus disorder prediction 1 30 - -
Vvi8g1030 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 199 - -
Vvi8g1030 199 MobiDBLite consensus disorder prediction 1 52 - -
Vvi8g1030 199 CDD AP2 40 98 IPR001471 GO:0003700|GO:0006355
Vvi8g1030 199 SUPERFAMILY DNA-binding domain 39 98 IPR016177 GO:0003677
Vvi8g1030 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 12 199 - -
Vvi8g1030 199 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Vvi8g1030 199 Pfam AP2 domain 38 88 IPR001471 GO:0003700|GO:0006355
Vvi8g1030 199 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Vvi8g1030 199 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g1163 Vvi8g1030 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15099 PF00847 AP2 2.20E-12 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1030 - - vvi:100261339 342.813