Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1040 ATGCCTGGTAAAAGATCGAACTACTCTCTCCTCAGTCAGTTTCCCGACGACCAGTTCGTCGGCGGAGCGGCCGGAAATCAGCCTCCCTTATACGAGTCCCTTTCTGGGGAGAAGAGCAAAGGGAAAGGCTTTGATTGGGATGAATTGAGGGCCAAGGCAGTGACCGGGACTGGGGACTCGTCGTCGTCCAAGAGTTGGGCACAGCAGACGGAGGAGAGTTACCAATTGCAGTTGGCGTTGGCGCTTCGGCTTTCGTCGGAGGCCACCTGTGCTGATGATCCCAATTTCTTGGATCCAGTGCCAGACGACTCGGCGTCCAGGTCGTTATCGTCGTCCGGGAGTTCGGTCGAGGCTATGTCTCATCGATTCTGGGTGAGTGGCTGCCTATCATATTTCGACAAAGTTCCTGATGGATTTTACCTAATTCACGGGATGGATCCATATGTGTGGACTGTATGCAATGATTTGAGAGAAAATGGTCGTATTCCTTCCATTGAATCACTAAAGCATGCTGAGCCTAGTGCTGATTCTCCAATTGAAGTTGTTTTGATTGATCGACGTACTGATCCCACTTTGAAGGAATTACAAAATAAGGTTCATGGTATTTCTTGTAGTTGCATGACCACAAAAGAGGTGGTTGATCAGCTTGCAAAGCTTGTCTGCAATTGCATGGGGGGTGCAGCTTCCACTGGAGAAGATGACTTTGTTTCCATCTGGCGGGAGTGCAGTGATGATCAAAAGGATTGTTTAGGATCTATTGTGGTTCCGATTGGTAGCCTGTCCTTTGGTCTCTGCAGACATCGTGCTTTACTGTTCAAAGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTGACAGGGAGTTTCTAGTTGATTTGGTTGGCAAGCCAGGGTGCTTATGCGAGCCTGATTCTTTGCTCAATGGTCCAGCTTCCATCTCAATTTCTTCCCCATTGCGCTTTCCACGTTCCAAACCAGTTGAAACTAACATTGATTTCAGGTCACTGGCTAAGCAGTATTTCTCAGAATGCCAATCCCTTAATCTTGTTTTTGAAGACACTTCAGTGGGTGTCATTGTTGATGAAGCTGATGGAGGAGATTCCATGTATCCTAAAAAATTTGATAGGAAGTGCACAGATAGAACCCACCTTGTGCCCATTTCAAGAAACAGAGGTGAAACTCCACAGTTGCCTATGCCCCCAAAAGTTGCTTGGCCAACCTTGTCTGATTTGAGAGGGGATACAATAAAAGATATGAGGTTCACTGATGGAGGCCAATTATATCCAAATAAACCATGCAAGGAACTTTCCCTTGATGTGGAGGATTTGGATATTCCATGGAGTGACCTTGTTTTAAAAGAGAGAATTGGAGCAGGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGGATGTTGCTGTAAAGGTTCTAATGGAACAAGATTTCCATGCAGAACGTTTCAAGGAATTTTTGAGGGAGGTTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGAGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGATGAGAGGCGTCGATTGAGTATGGCTTATGATGTGGCCAAGGGCATGAATTATCTTCATAAACGCAATCCTCCCATTGTTCATCGAGATTTGAAGTCTCCAAACCTTTTGGTTGACAAAAAATACACCGTGAAGGTTTGTGATTTTGGTCTTTCACGGTTCAAGGCAAATACATTTCTTTCATCCAAATCGGCGGCAGGGACGCCTGAGTGGATGGCACCAGAAGTTCTTCGGGATGAGGCATCAAATGAAAAGTCAGACATATATAGCTTTGGTATAATCTTGTGGGAACTTGCAACATTGCAACAACCTTGGAGTAATTTAAATCCAGCACAGGTTGTAGCAGCTGTTGGTTTTAAGGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTGGCTTCCATAATTGAAGCATGTTGGGCAAATGAGCCTTGGAAGCGCCCTTCCTTTTTCAACATCATGGAATCCTTGAAGCCACTGATTAAACCTCCCACGCCTCAGCCAGTTCGTGCAGATAGACCACTGCTTACCTGA 2238 45.49 MPGKRSNYSLLSQFPDDQFVGGAAGNQPPLYESLSGEKSKGKGFDWDELRAKAVTGTGDSSSSKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPVPDDSASRSLSSSGSSVEAMSHRFWVSGCLSYFDKVPDGFYLIHGMDPYVWTVCNDLRENGRIPSIESLKHAEPSADSPIEVVLIDRRTDPTLKELQNKVHGISCSCMTTKEVVDQLAKLVCNCMGGAASTGEDDFVSIWRECSDDQKDCLGSIVVPIGSLSFGLCRHRALLFKVLADTIDLRCRIAKGCKYCTRDDASSCLVRVGPDREFLVDLVGKPGCLCEPDSLLNGPASISISSPLRFPRSKPVETNIDFRSLAKQYFSECQSLNLVFEDTSVGVIVDEADGGDSMYPKKFDRKCTDRTHLVPISRNRGETPQLPMPPKVAWPTLSDLRGDTIKDMRFTDGGQLYPNKPCKELSLDVEDLDIPWSDLVLKERIGAGSFGTVHRADWNGSDVAVKVLMEQDFHAERFKEFLREVSIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAREMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRFKANTFLSSKSAAGTPEWMAPEVLRDEASNEKSDIYSFGIILWELATLQQPWSNLNPAQVVAAVGFKGKRLEIPRDLNPQVASIIEACWANEPWKRPSFFNIMESLKPLIKPPTPQPVRADRPLLT* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17884682 17902051 - Vvi8g1040 Vvi8g1040 791263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1040 745 Pfam Ethylene-responsive protein kinase Le-CTR1 116 322 - -
Vvi8g1040 745 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1 45 398 - -
Vvi8g1040 745 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1 445 729 - -
Vvi8g1040 745 Pfam Protein tyrosine and serine/threonine kinase 472 725 IPR001245 GO:0004672|GO:0006468
Vvi8g1040 745 ProSiteProfiles Protein kinase domain profile. 471 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1040 745 Gene3D Phosphorylase Kinase; domain 1 464 549 - -
Vvi8g1040 745 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 445 729 - -
Vvi8g1040 745 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 45 398 - -
Vvi8g1040 745 ProSitePatterns Protein kinases ATP-binding region signature. 477 498 IPR017441 GO:0005524
Vvi8g1040 745 SMART serkin_6 471 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1040 745 Gene3D Transferase(Phosphotransferase) domain 1 550 736 - -
Vvi8g1040 745 CDD STKc_MAP3K-like 477 725 - -
Vvi8g1040 745 MobiDBLite consensus disorder prediction 17 42 - -
Vvi8g1040 745 SUPERFAMILY Protein kinase-like (PK-like) 456 724 IPR011009 -
Vvi8g1040 745 PRINTS Tyrosine kinase catalytic domain signature 545 558 IPR001245 GO:0004672|GO:0006468
Vvi8g1040 745 PRINTS Tyrosine kinase catalytic domain signature 586 604 IPR001245 GO:0004672|GO:0006468
Vvi8g1040 745 PRINTS Tyrosine kinase catalytic domain signature 633 643 IPR001245 GO:0004672|GO:0006468
Vvi8g1040 745 PRINTS Tyrosine kinase catalytic domain signature 652 674 IPR001245 GO:0004672|GO:0006468
Vvi8g1040 745 PRINTS Tyrosine kinase catalytic domain signature 696 718 IPR001245 GO:0004672|GO:0006468
Vvi8g1040 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 592 604 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76782 PF07714 PK_Tyr_Ser-Thr 1.10E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1040 K14510 - vvi:100240856 1380.54