Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi8g1051 | ATGGAGAGAAGTTTGGGAGGTGGTGACGATGGCGGAGGCGTTGGTGGCAACGTAGGTGGTCGTATTAGTGGTGGTGGTGGCGGCGGCAGTGGAAGTTTTGATTTATTGGGGAGGAAAAAGAGAGGGAGGCCGAGAAAGTATGATGCGGATGGGAACTTGAGATTATCGTATGCAGTTTCACCACCACCTGGATTTACTTTGTCATCTCCTTCTTCTGACTTTTCTTCGAAGAGGGGCCGAGGCCGGCCTCCTGGGTCCGGCAACTGGCAGCTTCTGGCTTCTTTAGGTGAACTGTTTGCCAACACAGCAGGAGGGGACTTTACGCCGCATGTGGTGACTGTAAATACAGGAGAGGATGTTGCATCAAAGATCCTCTCCTTTTCTCAAAAGGGTCCTAGAGGAATATGTGTTCTCTCCGCCAATGGAGCTGTTTCGAATGTTACTATTCGCCAGCCCGGTTCTTCTGGCGGTATCTTGACATATGAGGGCCGGTTTGAGATATTATCTTTGTCTGGGTCATTCACGGTCTCTGATTCTGGTGGTGCAAGAAGCAGGACAGGTGGATTAAGTGTCTCATTGGCTGGTCCTGATGGTCGCGTGATAGGTGGTGGAATTGCTGGCATATTGACTGCTGCTGGTCCAATCCAGATTGTTGTCGGCAGCTTCATGCCCAATGGTTACAAGACACACAAAAGGAAGCACCATCGTGAACCTACGACTACCTCCATTATCCCACCTGCCCCAGATACAGTTACAGCTGCAAGACCAATCTCACAAGCAGCACCTGAAGTTGGCCCCTGTCTGAACTCAACATCCCCATCACATGGACAAAGCCATGGAGAAGCAGATGACAGTGTGAACAATAAACAGATTTCAAATGTAATATCTTTGCAGAGCGCTGCTTGGAATGGGTCTGAGCACAAATCTGAACAGAGACCCTCTCCTGACATCAATTTGACGGTGCCCAGTGAATAG | 975 | 49.74 | MERSLGGGDDGGGVGGNVGGRISGGGGGGSGSFDLLGRKKRGRPRKYDADGNLRLSYAVSPPPGFTLSSPSSDFSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVASKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTVSDSGGARSRTGGLSVSLAGPDGRVIGGGIAGILTAAGPIQIVVGSFMPNGYKTHKRKHHREPTTTSIIPPAPDTVTAARPISQAAPEVGPCLNSTSPSHGQSHGEADDSVNNKQISNVISLQSAAWNGSEHKSEQRPSPDINLTVPSE* | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 18015430 | 18020188 | - | Vvi8g1051 | Vvi8g1051 | 791274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi8g1051 | 324 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 106 | 231 | - | - | |
| Vvi8g1051 | 324 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
| Vvi8g1051 | 324 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
| Vvi8g1051 | 324 | ProSiteProfiles | PPC domain profile profile. | 104 | 247 | IPR005175 | - | |
| Vvi8g1051 | 324 | MobiDBLite | consensus disorder prediction | 262 | 324 | - | - | |
| Vvi8g1051 | 324 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 30 | 322 | IPR039605 | GO:0003680 | |
| Vvi8g1051 | 324 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 109 | 222 | IPR005175 | - | |
| Vvi8g1051 | 324 | PANTHER | AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN | 30 | 322 | - | - | |
| Vvi8g1051 | 324 | SMART | AT_hook_2 | 38 | 50 | IPR017956 | GO:0003677 | |
| Vvi8g1051 | 324 | SMART | AT_hook_2 | 77 | 89 | IPR017956 | GO:0003677 | |
| Vvi8g1051 | 324 | MobiDBLite | consensus disorder prediction | 264 | 324 | - | - | |
| Vvi8g1051 | 324 | Gene3D | - | 109 | 241 | - | - | |
| Vvi8g1051 | 324 | MobiDBLite | consensus disorder prediction | 229 | 248 | - | - | |
| Vvi8g1051 | 324 | CDD | DUF296 | 108 | 222 | IPR005175 | - | |
| Vvi8g1051 | 324 | MobiDBLite | consensus disorder prediction | 62 | 76 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi8g1051 | - | - | vvi:100254577 | 580.096 |