Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1062 ATGGAGTTTTATGCGTTGCCTTTCTCCCTCTCCTTCCTCTCTCTTTCTTTCTCTCTCCTTCTCCTCCTCTCACCCTCTCTGTCTCTCTCTAACGATACCTTTGCACTCTCTCAGTTCCGCTCTCAGACCGACGTCCATGGCACTCTCATCTCCAACTGGACCGGCGCTGACGCCTGCTCTGGCGTGTGGCGTGGCGTCCGTTGTTTCGATGGTCGAGTCGCCGTTCTTTCTCTACCTTCTTTATCTCTCCGTGGCCCCATAGACGCCCTCTCCGGTCTCAACCAGCTACGAATTCTTGATCTTCAGGGCAACCGTCTAAACGGCACTGTTTTGCCCATCGCTAATTGCACCAATCTCAAACTTGTGTACCTCGCTGGAAACGACTTTTCCGGTGAAATTCCGCCAGATTTTTCCTCACTCAGGCGATTGCTCCGGCTGGACCTCTCCGACAACAATCTACGTGGACCCATTCCGGGGTCTCTCTCCAGCTTGCCTCGTCTACTCACTCTTCGACTGGAAAACAATGTCCTCTCCGGTCAAGTCCCGGATCTCTCGGCGTCTCTCCCGAATCTCAAAGAGTTGAATTTGTCTAATAATGGGTTTTACGGGCACTTACCCGAAGGTATGGCGAAGAAATTCGGTGACCGGAGCTTTCAGGGGAATGAAGGGCTATGCGGGTCGAGCCCTTTGCCCGCTTGTTCGTTCACGGAGGCTTCCCCGACGGCCGCTTCTGCCCAAACAGGGCTAAGCCCGGGAGCGATTGTGGCAATTGTGATAGCCAATTCAGCGGGTAGTGAGGGTGGGAGGAGAAGGAGAAGTGGGAGCAGCTCTGCTAGCGAGAAGAAGAAGGTGTATGCAAGCAATGGAGGTGGAGCAGACAGCGATGGGACCAACGCCACTGATCGAAGCAAGCTTGTGTTTTTTGATAGAAGGAAGCAGTTTGAGCTGGAGGATTTGCTGAGGGCGTCAGCTGAAATGCTCGGGAAAGGGAGCCTGGGGACAGTGTATAAGGCGGTGCTGGATGATGGGTGCACAGTAGCTGTGAAGAGGCTAAAGGATGCAAACCCATGCGCGAGGAAGGAGTTCGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCACCCCAACATTGTGCGCTTCAGAGCCTACTATTATGCCAAGGAAGAAAAGCTCCTAGTGTATGATTATCTCCCCAATGGGAGCTTGCATTCTCTTCTTCATGGAAACCGAGGTCCAGGAAGAATTCCCTTGGACTGGACTACAAGGATTAGCTTGGTGTTAGGGGCTGCTCGAGGCCTTGCCCGAATTCATGAAGAGTACACAGCATCCAAAATACCTCATGGGAATGTCAAATCTTCCAATATACTGCTTGATAAAAATGGTGTGGCTTGCATTTCTGATTTTGGGTTGGCACTGCTTTTGAACCCAGTTCACGCCACTGCAAGACTGGGAGGATACCGTGCTCCGGAGCAGTTGGAAATCAAGAGGCTCTCTCAGAAGGCGGATGTGTACAGCTTTGGGGTGCTGTTGTTAGAAGTACTTACTGGGAGAGCTCCATCACAGTATCCTTCCCCAAGTCCAGAGGTGTTCGATCAAGAACTTTTGAGGTACAAGAACATCGAGGAAGAGCTGGTGGCAATGCTTCAGGTGGGGATGGCCTGTGTTGTGCCACAACCAGAAAAGAGGCCTACCATGTCGGAAGTGGCCAAGATGATCGAGGATATCAGGGTGGAGCAATCTCCTTTGGGAGAGGAGTATGACGAATCACGCAATTCACTTTCACCTTCACTGGCGACCACCGAAGATGGGTTAGCCGGCTACTGA 1824 51.92 MEFYALPFSLSFLSLSFSLLLLLSPSLSLSNDTFALSQFRSQTDVHGTLISNWTGADACSGVWRGVRCFDGRVAVLSLPSLSLRGPIDALSGLNQLRILDLQGNRLNGTVLPIANCTNLKLVYLAGNDFSGEIPPDFSSLRRLLRLDLSDNNLRGPIPGSLSSLPRLLTLRLENNVLSGQVPDLSASLPNLKELNLSNNGFYGHLPEGMAKKFGDRSFQGNEGLCGSSPLPACSFTEASPTAASAQTGLSPGAIVAIVIANSAGSEGGRRRRSGSSSASEKKKVYASNGGGADSDGTNATDRSKLVFFDRRKQFELEDLLRASAEMLGKGSLGTVYKAVLDDGCTVAVKRLKDANPCARKEFEQYMDVIGKLKHPNIVRFRAYYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHEEYTASKIPHGNVKSSNILLDKNGVACISDFGLALLLNPVHATARLGGYRAPEQLEIKRLSQKADVYSFGVLLLEVLTGRAPSQYPSPSPEVFDQELLRYKNIEEELVAMLQVGMACVVPQPEKRPTMSEVAKMIEDIRVEQSPLGEEYDESRNSLSPSLATTEDGLAGY* 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18144353 18146972 + Vvi8g1062 Vvi8g1062 791285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1062 607 SUPERFAMILY L domain-like 30 210 - -
Vvi8g1062 607 ProSiteProfiles Protein kinase domain profile. 321 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1062 607 CDD STKc_IRAK 327 575 - -
Vvi8g1062 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 260 522 - -
Vvi8g1062 607 Gene3D Transferase(Phosphotransferase) domain 1 397 594 - -
Vvi8g1062 607 MobiDBLite consensus disorder prediction 581 607 - -
Vvi8g1062 607 MobiDBLite consensus disorder prediction 265 297 - -
Vvi8g1062 607 Pfam Protein kinase domain 325 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1062 607 PANTHER LRR RECEPTOR-LIKE KINASE 527 596 - -
Vvi8g1062 607 SUPERFAMILY Protein kinase-like (PK-like) 325 572 IPR011009 -
Vvi8g1062 607 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Vvi8g1062 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 246 - -
Vvi8g1062 607 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 527 596 - -
Vvi8g1062 607 Gene3D Phosphorylase Kinase; domain 1 292 396 - -
Vvi8g1062 607 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515
Vvi8g1062 607 PANTHER LRR RECEPTOR-LIKE KINASE 260 522 - -
Vvi8g1062 607 PANTHER LRR RECEPTOR-LIKE KINASE 12 246 - -
Vvi8g1062 607 Gene3D Ribonuclease Inhibitor 31 139 IPR032675 -
Vvi8g1062 607 Gene3D Ribonuclease Inhibitor 140 239 IPR032675 -
Vvi8g1062 607 SMART LRR_typ_2 93 118 IPR003591 -
Vvi8g1062 607 SMART LRR_typ_2 188 212 IPR003591 -
Vvi8g1062 607 SMART LRR_typ_2 140 163 IPR003591 -
Vvi8g1062 607 SMART LRR_typ_2 164 187 IPR003591 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76783 PF00069 Pkinase 2.20E-36 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1062 - - vvi:100266483 1074.69