Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1065 ATGCTAGGCCTAGAAATGCCTCTACAGCAACCGCAACAACAGCAAAACCCTCAAAATCCTCACCACACACACCACCACACCCACCTCCAACAGCACCCCCAAATGGTTGCTTTTGCCCACCCCGATCCTGATCACCACTCACAATCTCAGCAGCCTGTGAAACATGGATACCCATATGTCACTAAAGCCAAACAACAGCTAACACTGAGCGATGAGGATGAGCCTGGACTCACGGGTGATGACAGCACTGCCGACGGGAAAAGAAAGGTGTCTCCTTGGCATAGAATGAAATGGACTGATAATATGGTGAGGTTGTTGATAATGGCAGTTTTTTATATTGGCGATGAAGGTGGGTCCGAGTGTAGTGACCCCTCCGCCAAGAAGAAGACCGGTGGATTGTTGCAGAAGAAAGGGAAATGGAAATCGGTGTCAAGAGCTATGATGGAGAAGGGGTTTTACGTGTCTCCGCAGCAGTGTGAAGACAAGTTCAATGATCTGAACAAGAGGTATAAGAGGGTTAATGATATACTGGGTAAGGGGACGGCGTGCCGGGTTGTGGAGAATCAGAGTTTACTCGACACGATGGACCAGCTATCGCCCAAAATGAAGGACGAAGTTCGAAAATTACTCAATTCGAAGCACCTATTTTTCAGGGAAATGTGTGCTTACCACAATAGCTGCGGTGGTGGTGGGACTTCTGGTGCCCATCCCTCACCACCGGATACAGCGACGGAGGCATCGAAGATGAGGAGGTTAAAAAGGGCGAGAAAGGGGCTGTTCCCATCACCATCGCCATCACCATTGATGAGGCAATTGAGCAGTGAGGTGATGAGCGTGCTGCAAGATGGAACAAAGAGCACATTGGAGAAGAAGCAATGGATGAGGAGCCGGATGATGCAATTGGAGGAGCAGAGGGTGAGCTACCAATGTAAAGCGTTTGAGCTGGAAAAGCAGCGGTTGAAGTGGGTGAAATTCAGCAGCAAGAAGGAGAGGGAAATGGAAAGGGAGAAGCTGGTGAACCAGCGAAAGAGGCTGGAAAACGAGAGAATGGCACTTCTACTTAGGCAGAAAGAGCATGGTGGGTGGTTTTGTAGTTTTCTCTTACTCCAAAATTTTGTTTATGATTTTGGTACTAGAGTATGTATCCATCCAATCTTGTCTACGCTCCTCTTAGTTCATTCTCCTCTTCTGGGTTGTTTTGGTGAAGCATTAAACATAACCATTAACTCATAG 1233 47.77 MLGLEMPLQQPQQQQNPQNPHHTHHHTHLQQHPQMVAFAHPDPDHHSQSQQPVKHGYPYVTKAKQQLTLSDEDEPGLTGDDSTADGKRKVSPWHRMKWTDNMVRLLIMAVFYIGDEGGSECSDPSAKKKTGGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDQLSPKMKDEVRKLLNSKHLFFREMCAYHNSCGGGGTSGAHPSPPDTATEASKMRRLKRARKGLFPSPSPSPLMRQLSSEVMSVLQDGTKSTLEKKQWMRSRMMQLEEQRVSYQCKAFELEKQRLKWVKFSSKKEREMEREKLVNQRKRLENERMALLLRQKEHGGWFCSFLLLQNFVYDFGTRVCIHPILSTLLLVHSPLLGCFGEALNITINS* 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18167204 18168821 - Vvi8g1065 Vvi8g1065 791288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1065 410 Coils Coil 328 355 - -
Vvi8g1065 410 MobiDBLite consensus disorder prediction 68 89 - -
Vvi8g1065 410 Gene3D - 98 172 - -
Vvi8g1065 410 MobiDBLite consensus disorder prediction 1 31 - -
Vvi8g1065 410 PANTHER F16F4.11 PROTEIN-RELATED 1 232 - -
Vvi8g1065 410 PANTHER F16F4.11 PROTEIN-RELATED 248 358 - -
Vvi8g1065 410 Coils Coil 298 318 - -
Vvi8g1065 410 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 1 232 - -
Vvi8g1065 410 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 248 358 - -
Vvi8g1065 410 Pfam Myb/SANT-like DNA-binding domain 95 222 IPR044822 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15104 PF13837 Myb_DNA-bind_4 5.80E-22 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1065 - - vvi:100259589 468.774