Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1066 ATGGGTGCAGCGCTCTCCAACCTGACCGAAGGCGCTAACGGCTCGACCATCGGTCCTGGTCTCGGTGACATACCTGAGAGTTGCGTCGCTTGCGTCTTTCTTTATCTCACTCCTCCTGAAATTTGCAATCTCGCTCGCCTGAACCGGGCCTTTCGTGGCGCTGCATCCTCCGATTCCGTGTGGGAGTCCAAGTTGCCTTCTAATTACCAGGATCTTCTTGACCTATTGCCTCCTGAACGCTACCATAATTTGTCTAAGAAGGACATCTTTGCCCTCCTTTCTCGTCCCGTGCCGTTTGATAATGGCAACAAGGAAGTATGGCTGGACAGGGATACAGGTAGGATTTGCATGGCTATCTCGGCAAAGGGGATGGTGATAACTGGGATAGAAGATAGAAGATACTGGAACTGGATACCTACAGAAGAATCTAGGTTCCATGTTGTGGCCTATTTGCAGCAAATCTGGTGGTTTGAAGTAGATGGGGTAGTCAAGTTCCATTTTCCAGCTGATGTCTATACTCTATCTTTCAGGCTTCAGCTAGGAAGATTTTCCAAAAGGCTGGGGCGACGTGTGCCCAATTTCGAACACACTCATGGTTGGGATATAAAGCCAGTACGATTCCAGTTGTCTACTTCAGATGGTCAGCAAGCATCATTTGAGTGCTGTTTAGATGAGACTGAACGTGAAGATGCAAATGGAAACCACAAGCGTGGGTGCTGGATAGATTATAAGGTAGGAGAATTCATTGTCACTGACTCAGAACCTGCCACTGAAGTAAGGTTTTCCATGAAACAGATTGATTGTACACATTCCAAAGGTGGGATTTGTGTAGATTCTGTATTTATTATCCCCAGTGATTTGAGAGGGCGAAAAAGAAGAGGAGTTTTGAAGAAGCCATGA 900 46.67 MGAALSNLTEGANGSTIGPGLGDIPESCVACVFLYLTPPEICNLARLNRAFRGAASSDSVWESKLPSNYQDLLDLLPPERYHNLSKKDIFALLSRPVPFDNGNKEVWLDRDTGRICMAISAKGMVITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFHFPADVYTLSFRLQLGRFSKRLGRRVPNFEHTHGWDIKPVRFQLSTSDGQQASFECCLDETEREDANGNHKRGCWIDYKVGEFIVTDSEPATEVRFSMKQIDCTHSKGGICVDSVFIIPSDLRGRKRRGVLKKP* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18178270 18183452 + Vvi8g1066 Vvi8g1066 791289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1066 299 Pfam Phloem protein 2 115 284 IPR025886 -
Vvi8g1066 299 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
Vvi8g1066 299 SUPERFAMILY F-box domain 18 90 IPR036047 GO:0005515
Vvi8g1066 299 PANTHER F-BOX DOMAIN, PHLOEM PROTEIN 2-LIKE PROTEIN-RELATED 1 294 - -
Vvi8g1066 299 PANTHER F-BOX PROTEIN PP2-A15 1 294 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1066 - - vvi:100256186 602.053