Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1067 ATGGATTGGAATGGCAACTTAAGACCCTTTGTTTCACGCCCAGAGAGTTCCTTCACCTTCCTCTACAACTATAACTACGACCCATATCCAGGGATGGAGGTTAAGCACCCAGTATCAGCGGAGACAGCCCATGCAATGGTTCGGCCTATGGACAAGAGTAGTTATGGAAACCAGGAAAAGAAGAAGCGACTAACAAATGAACAGCTAGAGTCGCTGGAGAGGAGTTTCCAGGAGGAGATAAAGCTCGAACCAGATAGAAAAATGAAGCTAGCACGAGAGCTTGGGCTCCAGCCGCGACAAATCGCAGTTTGGTTCCAGAACAGGCGCGCTAGGTGGAAGACGAAGGAGCTGGAACGCTTATATGATGTCCTTAAACAAGAGTACGATCTCATGTCCAAGGAGAAGCAAAAGCTCCAAGAAGAGGTTTCAAAATTGAAAGGTATCCTTAGGGAGCAGGCGACTAGGAAGCAAGTATCCATGGGCTACACAGAGGTTTCCGGGGAAGAGACTGTGGAGAGCACATCCATCACGATTCGTAGCTCCAACAAGCCACGAGGATTAAGTCATCAAATTGCTGACTGCAACTATGTGTACACCGCGGAGGAATATAACCCAGTGTCGCCCCCTTATTGGGGTGTTCTGCCGCCTTATCCTTCAACCTAG 663 48.72 MDWNGNLRPFVSRPESSFTFLYNYNYDPYPGMEVKHPVSAETAHAMVRPMDKSSYGNQEKKKRLTNEQLESLERSFQEEIKLEPDRKMKLARELGLQPRQIAVWFQNRRARWKTKELERLYDVLKQEYDLMSKEKQKLQEEVSKLKGILREQATRKQVSMGYTEVSGEETVESTSITIRSSNKPRGLSHQIADCNYVYTAEEYNPVSPPYWGVLPPYPST* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18187599 18188969 + Vvi8g1067 Vvi8g1067 791290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1067 220 Coils Coil 55 75 - -
Vvi8g1067 220 Pfam Homeodomain 60 113 IPR001356 GO:0003677
Vvi8g1067 220 Coils Coil 107 155 - -
Vvi8g1067 220 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 205 - -
Vvi8g1067 220 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Vvi8g1067 220 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677
Vvi8g1067 220 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677
Vvi8g1067 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 205 IPR045224 GO:0003700
Vvi8g1067 220 SMART HOX_1 58 119 IPR001356 GO:0003677
Vvi8g1067 220 SUPERFAMILY Homeodomain-like 48 116 IPR009057 -
Vvi8g1067 220 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Vvi8g1067 220 Gene3D - 24 116 - -
Vvi8g1067 220 CDD homeodomain 60 116 IPR001356 GO:0003677
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15105 PF00046 Homeodomain 4.90E-17 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1067 - - vvi:100251028 428.328