Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1069 ATGGGGGATAAGCAGGAGGAGGATCGGAGCGAGAGTAGTGACTACACATCCGAAGACGAAGGGACCGAGGACTATAGGCGTGGAGGCTACCACGCTGTTCGAATCGGCGACACCTTCAAGAACGGTCGGTACATCGTTCAAACCAAGCTCGGATGGGGCCATTTCTCAACTGTCTGGCTTGCTTGGGACACCTTAAACTCCCGGTATGTGGCTCTGAAAGTTCAAAAGAGTGCTCAGCATTACACTGAAGCAGCTATGGATGAGATAACTATATTGCAACAGATTGCGGAAGGAGACCCAGATGATAAGAAATGTGTTGTGAAGCTTTTGGATCATTTTAAGCATTCTGGTCCAAATGGGCAGCATGTTTGCATGGTTTTTGAGTATTTAGGGGATAACCTTTTAACTCTTATCAAGTATACTGATTATCATGGCTTGCCCCTTCACATGGTTAAGGAGATCTGTTTCCATGTTTTAGAGGGTTTGGATTACTTGCATGGACAGCTCTCAATTATACACACGGATTTGAAGCCAGAGAATATTTTGCTGTTATCCATGATAGACCCATCAAAGGATCCGAGAAAGTCAGGTGCAACACTAATTCTTCCATCAAATAAAGACAAGAATGCTAAGCAAGCAGCTAAAGGTTATTTGGCTTCTGTGGAAGACCAACCCAATAGTTCTGGCAATGGGGACAGATTATTGGATGCTGATGGAAAAAAAGGACCTGGACAAGGAAATCAAGGTCATAGGAGAGGGAGTCATTCCATGAGGCAGAAGCTGTTGGCTTCTGTTGACCTGAAGTGCAAATTGGTTGACTTTGGTAATGCCTGTTGGACATACAAACAGTTCACAAATGATATCCAGACAAGGCAGTATAGGTGCCCAGAGGTTATCCTTGGATCTAAATATTCTACTTCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGTGATGTTCTCTTCGATCCTCACAGTGGTGACAACTTTGATAGAGATGAGGACCATTTAGCACTGATGATGGAGCTCCTTGGAATGATGCCCCGCAAGATTGCCTTAGGTGGTCAATATTCCCGGGAGTTCTTCAACAGATATGGTGATTTGAGGCACATCCGCCGGTTGCGTTTCTGGCCCATGAATAAGGTTCTTGTAGAGAAGTATGAGTTCAGTGAGAAGGATGCAAATGATATGGCCGACTTCCTGGTTCCCATACTTGATTTTGTTCCTGAGAAGCGGCCAACTGCAGCACAGTGCCTTCTTCATCCATGGATCAGTGCGGGCCCTCTTCTTTTAGAGCCTTCCATGCCTTCTGTAAAAATTCAAGCAGGGGAGAGTGTCATTTGTGAGAAAAAGAAGAGGGAGAAGGATGAGAGGGAGGCAATGGAGATTGGAATGGGGAACATTGCCATCAGCGCAGATTCTAAACCAGTTGAAGATCCTCAATCAAGTAGTAAACCCTCTTCTAAGGCATCAACTAGTGCGCCTAGGTAG 1506 45.15 MGDKQEEDRSESSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGRYIVQTKLGWGHFSTVWLAWDTLNSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYTDYHGLPLHMVKEICFHVLEGLDYLHGQLSIIHTDLKPENILLLSMIDPSKDPRKSGATLILPSNKDKNAKQAAKGYLASVEDQPNSSGNGDRLLDADGKKGPGQGNQGHRRGSHSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGQYSREFFNRYGDLRHIRRLRFWPMNKVLVEKYEFSEKDANDMADFLVPILDFVPEKRPTAAQCLLHPWISAGPLLLEPSMPSVKIQAGESVICEKKKREKDEREAMEIGMGNIAISADSKPVEDPQSSSKPSSKASTSAPR* 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18196225 18203602 + Vvi8g1069 Vvi8g1069 791292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1069 501 PANTHER SRSF PROTEIN KINASE 1-LIKE 10 212 - -
Vvi8g1069 501 PANTHER SRSF PROTEIN KINASE 1-LIKE 251 499 - -
Vvi8g1069 501 MobiDBLite consensus disorder prediction 213 256 - -
Vvi8g1069 501 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 251 499 - -
Vvi8g1069 501 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 212 - -
Vvi8g1069 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vvi8g1069 501 SMART serkin_6 44 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1069 501 Gene3D Transferase(Phosphotransferase) domain 1 98 429 - -
Vvi8g1069 501 SUPERFAMILY Protein kinase-like (PK-like) 39 443 IPR011009 -
Vvi8g1069 501 ProSiteProfiles Protein kinase domain profile. 44 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1069 501 MobiDBLite consensus disorder prediction 481 501 - -
Vvi8g1069 501 Pfam Protein kinase domain 262 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1069 501 Pfam Protein kinase domain 45 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g1069 501 CDD STKc_SRPK 33 429 - -
Vvi8g1069 501 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Vvi8g1069 501 Gene3D Phosphorylase Kinase; domain 1 30 129 - -
Vvi8g1069 501 MobiDBLite consensus disorder prediction 1 24 - -
Vvi8g1069 501 MobiDBLite consensus disorder prediction 468 501 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76784 PF00069 Pkinase 3.60E-20 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1069 K08832 - vvi:100254468 966.452