Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1074 ATGGTGGCGACGATGGGCTCCTCGTCTAGTTTTCTGGTTTTGAGTTTGTTTGTATTGTCTTTTTGCTTGACCTGTAATGCTGATCAAATCACATCCGACGCAAGAGGCATCATGATCAACGGAGAAAGGAAAATTCTCATCTCCGGGTCCGTTCATTATCCCCGTAGTACTCCTGAGATGTGGCCAGATTTGATCCAGAAGTCCAAGGATGGAGGGCTCAACACAATTGACACCTATGTTTTCTGGGATCTGCATGAGCCTCAACGCCGTCAGTATGACTTTACAGGCAATAAAGACCTGGTGAGGTTTATTAAAGCCATCCAAGCTCAAGGGCTTTACGCAGTTCTTCGAATTGGACCATACGTTTGTGCAGAATGGACTTATGGGGGCTTTCCGGTGTGGCTGCATAACCAGCCAAGCATCCAGTTAAGGACAAACAATACTGTCTACATGAGCGAAATGCAAACCTTCACAACCATGATAGTGGACATGATGAAGAAAGAGCAGCTCTTTGCCTCACAAGGAGGTCCCATAATCATCTCTCAGATCGAGAATGAATATGGAAATGTGATGCGGGCATACCATGACGCTGGAGTACAATACATCAATTGGTGTGCACAAATGGCCGCTGCTTTAGATACCGGCGTGCCATGGATCATGTGCCAACAAGACAACGCCCCACAGCCAATGATTAACACGTGTAATGGCTATTACTGCGATCAATTCACCCCTAATAATCCCAACAGTCCTAAGATGTGGACTGAGAACTGGAGTGGCTGGTACAAGAACTGGGGTGGCTCAGACCCACATAGAACTGCAGAGGATCTAGCCTTCTCCGTTGCTCGCTTTTACCAATTGGGTGGCACTTTCCAAAACTACTATATGTACCACGGTGGTACCAATTTCGGTCGCACAGCAGGCGGTCCATACATCACCACATCTTATGATTATGATGCACCATTGAATGAATATGGTAATAAGAATCAACCCAAGTGGGGACATCTCAGGGATCTCCATCTCCTCCTCTTGTCAATGGAGAAGGCTCTTACCTACGGTGATGTCAAAAATGTTGATTATGAGACCCTGACTTCGGCAACGATCTACAGTTATCAAGGGAAATCGAGTTGTTTCTTCGGAAATTCAAATGCGGATAGGGATGTGACAATCAACTATGGAGGAGTTAATTACACTATTCCTGCATGGTCCGTTAGCATACTTCCTGATTGCTCCAACGAAGTTTATAACACCGCCAAGGTTAACAGTCAGTACTCCACGTTTGTAAAGAAGGGCAGTGAGGCTGAGAACGAGCCAAATTCCTTGCAATGGACTTGGAGAGGTGAGACCATTCAGTACATTACACCGGGGAGGTTCACTGCTTCAGAGCTCTTGGATCAAAAGACAGTGGCAGAAGATACGAGTGATTATTTGTATTACATGACCACTAATGATGATCCCATTTGGGGCAAGGACTTGACTCTAAGCGTAAACACTAGCGGCCACATACTTCATGCTTTTGTGAATGGAGAGCATATAGGATACCAATATGCATTACTTGGACAGTTTGAATTCCAGTTCCGGCGAAGTGTTACACTGCAGCTTGGGAAGAATGAAATAACTTTGCTTAGTGCCACTGTTGGATTGACTAATTATGGGCCCGACTTCGACATGGTGAATCAGGGAATCCATGGTCCAGTTCAAATAATTGCCAGCAACGGCAGTGCAGATATTATCAAGGACTTGTCTAATAATAACCAGTGGGCGTACAAGGCTGGGTTGAATGGTGAGGACAAGAAAATCTTCCTCGGGCGTGCACGCTATAACCAGTGGAAATCTGATAATCTTCCAGTAAACAGGTCGTTTGTTTGGTACAAGGCTACTTTCGATGCTCCCCCCGGAGAGGACCCAGTTGTGGTGGACTTAATGGGTTTGGGCAAGGGAGAGGCTTGGGTGAATGGCCACAGCCTTGGCCGGTACTGGCCATCTTATATCGCCCGTGGAGAAGGGTGCAGTCCTGAATGCGACTATAGAGGACCATACAAGGCCGAAAAATGCAATACTAACTGTGGGAATCCTTCTCAAAGATGGTACCATGTGCCTCGGTCTTTCCTAGCGAGTACAGATAACAGGTTGGTTTTGTTTGAGGAGTTTGGAGGCAACCCATCATCGGTGACCTTCCAAACTGTGACTGTTGGGAACGCTTGTGCCAATGCACGTGAAGGGTACACCTTGGAATTGTCATGCCAAGGGAGAGCTATCTCCGGCATCAAATTTGCTAGCTTTGGTGATCCTCAAGGCACTTGTGGAAAGCCATTCGCCACAGGCAGTCAAGTCTTTGAGAAGGGCACCTGCGAGGCTGCTGACTCATTATCCATCATCCAAAAGTTATGTGTTGGCAAATACAGTTGTTCCATTGATGTCTCGGAACAGATTCTTGGGCCTGCTGGTTGTACCGCGGACACAAAGAGGCTGGCGGTTGAAGCGATCTGTTAG 2490 46.79 MVATMGSSSSFLVLSLFVLSFCLTCNADQITSDARGIMINGERKILISGSVHYPRSTPEMWPDLIQKSKDGGLNTIDTYVFWDLHEPQRRQYDFTGNKDLVRFIKAIQAQGLYAVLRIGPYVCAEWTYGGFPVWLHNQPSIQLRTNNTVYMSEMQTFTTMIVDMMKKEQLFASQGGPIIISQIENEYGNVMRAYHDAGVQYINWCAQMAAALDTGVPWIMCQQDNAPQPMINTCNGYYCDQFTPNNPNSPKMWTENWSGWYKNWGGSDPHRTAEDLAFSVARFYQLGGTFQNYYMYHGGTNFGRTAGGPYITTSYDYDAPLNEYGNKNQPKWGHLRDLHLLLLSMEKALTYGDVKNVDYETLTSATIYSYQGKSSCFFGNSNADRDVTINYGGVNYTIPAWSVSILPDCSNEVYNTAKVNSQYSTFVKKGSEAENEPNSLQWTWRGETIQYITPGRFTASELLDQKTVAEDTSDYLYYMTTNDDPIWGKDLTLSVNTSGHILHAFVNGEHIGYQYALLGQFEFQFRRSVTLQLGKNEITLLSATVGLTNYGPDFDMVNQGIHGPVQIIASNGSADIIKDLSNNNQWAYKAGLNGEDKKIFLGRARYNQWKSDNLPVNRSFVWYKATFDAPPGEDPVVVDLMGLGKGEAWVNGHSLGRYWPSYIARGEGCSPECDYRGPYKAEKCNTNCGNPSQRWYHVPRSFLASTDNRLVLFEEFGGNPSSVTFQTVTVGNACANAREGYTLELSCQGRAISGIKFASFGDPQGTCGKPFATGSQVFEKGTCEAADSLSIIQKLCVGKYSCSIDVSEQILGPAGCTADTKRLAVEAIC* 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18228340 18233371 + Vvi8g1074 Vvi8g1074 791297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1074 829 Gene3D Glycosidases 24 345 - -
Vvi8g1074 829 ProSiteProfiles SUEL-type lectin domain profile. 737 829 IPR000922 GO:0030246
Vvi8g1074 829 PANTHER BETA-GALACTOSIDASE RELATED 13 822 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 Pfam Beta-sandwich domain in beta galactosidase 349 419 IPR041392 -
Vvi8g1074 829 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Vvi8g1074 829 Gene3D - 734 829 IPR043159 -
Vvi8g1074 829 Pfam Glycosyl hydrolases family 35 37 339 IPR031330 -
Vvi8g1074 829 SUPERFAMILY Galactose-binding domain-like 582 742 IPR008979 -
Vvi8g1074 829 SUPERFAMILY Galactose-binding domain-like 403 570 IPR008979 -
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 618 632 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 PRINTS Glycosyl hydrolase family 35 signature 645 661 IPR001944 GO:0004553|GO:0005975
Vvi8g1074 829 Gene3D - 580 733 - -
Vvi8g1074 829 SUPERFAMILY (Trans)glycosidases 30 343 IPR017853 -
Vvi8g1074 829 Pfam Galactose binding lectin domain 745 829 IPR000922 GO:0030246
Vvi8g1074 829 PANTHER BETA-GALACTOSIDASE 13 822 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1074 - - vvi:100252769 1702.18