Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g1075 ATGGATGACAGTAAACCAGTAGGGGCAGGAGGTTATGTTTGGCGCCTTTCCAACATGGCTCTTCTCTCTGTTTATTTTCCCCAAACCCCATTTCCTTTCTGCCTCTCAAGGCCTACTTTACCATCACAGTCGCTGTATTCTCTTTCTCTCTCTAAAACCTCCTTTTCTTCCTCTAGATCCAAACCCTATGCCCTTCTAACATCACACCCTCCTCTTTCCAACCAACCGGCTCTTCTGTCCAATTTTCCTTCAGTTTCTAATGACACCGTCAACGACCACTACTATTTGCTAGACTTATCGGTTCGGTACGATGATGTTGAGCTCATCAAGGCTGTCCACGCTTCAATTTTCAAGCTTGCAGAAGACATTCATTTGGCCAATGCTCTCATCGTGGCTTATCTCAAACTGGGTATGGTTCCTAATGCCTACAAGGTTTTTGTGGGACTTTCGTGCCCGAATGTGGTGTCTTATACTGCCATGATTTCGGGTTTCGCCAAGTCTAATCGAGAACGCCAAGCTATGGAGATTTTTTTTAGGATGAGAAGTTCAGGTATTGAGCTTAATGAATTTAGTTTTGTGGCGATATTAACAGTATGCATTCGGCTGTTGGATTTAGAATTGGGTTGTCAACTTCATGCTATTGTGATTAAAATGGGCTTTTTGAATTACACTTTTGTTTCCAACGCACTGATGGGTTTGTACGGTAAGTGTGGGTATTTGGACAGTGTGCTTCAGTTATTCGATGAAATGCCTCACAGAGATATTGCGTCATGGAATACTGTGATTTCGAGTGTGGTGAAGGAGATGATGTATGAGAGAGCATTTGAATTGTTTCGTGATATGCGGAGAATTGATGGATTTAGAATTGACCATTTTACACTTTCAACCATTCTGGTGGCAGCCAGAGGGTTAGCTTCGATGGTAGGGCGGGAAATCCATGCCCATGTTATCAAAATTGGGTTTGAGTCCAACATAAGTGTGATCAATGCTCTAATTAGGTTTTACACAAAATGTGGGAGCATAAAACATGTGGTGGCTTTGTTCGAGAAGATGCGTGTAAGAGATGTCATTACTTGGACAGAGATGATTACAGCTTACATGGAATTTGGGCTTACAGATTTGGCTTTGGAGGTCTTTGATAAGATGCCTGCGAGGAATTCTATTTCTTATAATGCTATTTTGTCTGGATTTTGTCAAAATGGAGAAGGATCGAAGGCTCTGGCTTTTTTTTGCAGAATGGTGGAGGAGGGTGTGGAATTAACAGATTTCACTTTGACTGGTGTTCTTAATGCTTGTGGGTTGCTTATGGAGGCGAAAATTAGCAAGCAAATTCATGGGTTTATCTTGAAGTTTGGTTTTGGGTCAAATGCTTGTATTGAAGCTGCATTGCTTGATATGTGCACAAGGTGTGGAAGGATGGCTGATGCTCAAAAGATGTTCTCTCAAGGGTCTTTCAGTCAGAGTGGTTCAATTATTTGGACTTCAATGATATGTGGTTATGCACGAAATGCGCAGCCAGAAGAGGCAATATCTCTTTTTTGCCAGAGCCAATTAGAGGGAGCAATGGTTGTTGACAAAGTTGCATCAACTGCTGTACTTGGTGTCTGTGGAACTCTAGCGTTTCATGAGATGGGGAAGCAAATCCACTGTCATGCTCTTAAATCTGGATTTTTATCTGATTTAGGGGTGGGGAATTCCATAATTACCATGTACTCTAAGTGCAGTAACATGGATGATGCAATTAAGGTTTTCAATGTTATGCCTGCACATGATATAGTTTCTTGGAATGGTTTAATTGCTGGACATCTTCTTCATAGGCAGGGGGACGAGGCTTTGTCTGTCTGGTCTAAGATGGAGAAGGCAGGTATAAAGCCAGATACAGTTACCTTTGTGTTGATAATTTCAGCTTACAGACATACTAACTCAAATTTAGTTGATAATTGTCGAAGATTGTTTCTCTCCATGAAAACCATATATCATATTGATCCCACTGTAGAACATTATACCTCCTTGGTTGGTGTTTTGGGTTATTGGGGTCTCCTAGAGGAAGCGGAGGAAATGATCAATAAGATGCCTATTGAGCCAGAGGCTTCAGTTTGGCGAGCTCTGCTTGATGCTTGTAGAATTCATTCTAATACAACCATTGGAAAACGAGCTGCAAAGCATCTACTTGCTATGAAGCCATTGGATCCGTCTACTTACATACTTGTATCAAACCTGTACTCTGCATATGGGAGATGGCATTGCTCTGATATGGTTAGAGAGGAGATGAGAGTGAAGGGGTTTCGGAAACATCCAGGCCGAAGTTGGATTATTCATGAAAACAAGGTTCATTCATTTTATGCTAGGGATAAATCCCATCCCCAAGCCAAAGACATACACAGTGGACTGGAGTTACTAATTATGGAATGCCTAAAGGCTGGATATGTGCCCGACACGAGTTTTGTTCTTCATGAAGTAGAAGAACATCAGAAGAAGGATTTTTTGTTCTATCACAGTGCAAAAATAGCTGCGACGTATGGGCTTCTGATGACCAGGCCCGGAAGACCCATTCGGATTGTGAAGAACATTCTTTTGTGCGGTGACTGTCATACTTTCTTGAAGTATGTTTCAATTGTTACTGGGAGAGAAATTTTTCTGAGGGATGCTTCAGGCCATCATTGTTTCTTGAATGGTCAATGCTCATGCAAAGATTACTGGTGA 2703 41.66 MDDSKPVGAGGYVWRLSNMALLSVYFPQTPFPFCLSRPTLPSQSLYSLSLSKTSFSSSRSKPYALLTSHPPLSNQPALLSNFPSVSNDTVNDHYYLLDLSVRYDDVELIKAVHASIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW* 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18233652 18236355 - Vvi8g1075 Vvi8g1075 791298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g1075 900 TIGRFAM PPR: pentatricopeptide repeat domain 257 283 IPR002885 -
Vvi8g1075 900 TIGRFAM PPR: pentatricopeptide repeat domain 327 355 IPR002885 -
Vvi8g1075 900 TIGRFAM PPR: pentatricopeptide repeat domain 593 627 IPR002885 -
Vvi8g1075 900 TIGRFAM PPR: pentatricopeptide repeat domain 492 515 IPR002885 -
Vvi8g1075 900 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Vvi8g1075 900 TIGRFAM PPR: pentatricopeptide repeat domain 155 189 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat family 386 432 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat family 591 637 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat family 254 298 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat family 152 199 IPR002885 -
Vvi8g1075 900 Pfam E motif 710 771 IPR046848 -
Vvi8g1075 900 Gene3D Tetratricopeptide repeat domain 543 640 IPR011990 GO:0005515
Vvi8g1075 900 Gene3D Tetratricopeptide repeat domain 83 203 IPR011990 GO:0005515
Vvi8g1075 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Vvi8g1075 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Vvi8g1075 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat 357 385 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat 329 355 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat 667 691 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat 492 515 IPR002885 -
Vvi8g1075 900 Pfam PPR repeat 565 589 IPR002885 -
Vvi8g1075 900 Pfam DYW family of nucleic acid deaminases 808 900 IPR032867 GO:0008270
Vvi8g1075 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 385 IPR002885 -
Vvi8g1075 900 Pfam E+ motif 777 798 IPR046849 -
Vvi8g1075 900 Gene3D Tetratricopeptide repeat domain 309 438 IPR011990 GO:0005515
Vvi8g1075 900 Gene3D Tetratricopeptide repeat domain 641 807 IPR011990 GO:0005515
Vvi8g1075 900 Gene3D Tetratricopeptide repeat domain 204 308 IPR011990 GO:0005515
Vvi8g1075 900 Gene3D Tetratricopeptide repeat domain 439 542 IPR011990 GO:0005515
Vvi8g1075 900 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 284 IPR002885 -
Vvi8g1075 900 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 52 427 - -
Vvi8g1075 900 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 502 887 - -
Vvi8g1075 900 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 420 511 - -
Vvi8g1075 900 PANTHER OS07G0172600 PROTEIN 52 427 - -
Vvi8g1075 900 PANTHER OS07G0172600 PROTEIN 420 511 - -
Vvi8g1075 900 PANTHER OS07G0172600 PROTEIN 502 887 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g1075 - - vvi:100266541 1741.47